Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99831 * 2 1 4 4 C 1.46900 * 111.00413 * 123.95378 * 2 1 3 5 5 C 1.50697 * 109.46984 * 66.04628 * 4 2 1 6 6 C 1.38338 * 119.92023 * 259.73326 * 5 4 2 7 7 C 1.38051 * 120.09092 * 179.73037 * 6 5 4 8 8 C 1.39059 * 119.94242 * 0.55960 * 7 6 5 9 9 N 1.39531 * 120.07262 * 179.72883 * 8 7 6 10 10 C 1.34776 * 119.99679 * 213.37598 * 9 8 7 11 11 O 1.21744 * 120.00285 * 5.28781 * 10 9 8 12 12 C 1.46166 * 119.99934 * 185.27888 * 10 9 8 13 13 H 1.08001 * 120.00178 * 0.02562 * 12 10 9 14 14 C 1.40123 * 120.00110 * 180.02562 * 12 10 9 15 15 N 1.30636 * 120.00263 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00163 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47371 * 89.99510 * 16 14 12 18 18 H 1.48504 * 109.47227 * 209.99836 * 16 14 12 19 19 H 1.48504 * 109.46896 * 329.99305 * 16 14 12 20 20 C 1.38986 * 119.84822 * 359.71251 * 8 7 6 21 21 C 1.38199 * 119.90320 * 359.97438 * 20 8 7 22 22 Cl 1.73595 * 119.97020 * 180.02562 * 21 20 8 23 23 H 1.08996 * 109.47239 * 296.04684 * 1 2 3 24 24 H 1.08999 * 109.47314 * 56.04982 * 1 2 3 25 25 H 1.08998 * 109.47049 * 176.04614 * 1 2 3 26 26 H 1.09005 * 109.47300 * 183.95896 * 3 2 1 27 27 H 1.09006 * 109.47375 * 303.94660 * 3 2 1 28 28 H 1.08996 * 109.47383 * 63.95478 * 3 2 1 29 29 H 1.08991 * 109.47332 * 186.05201 * 4 2 1 30 30 H 1.09001 * 109.46635 * 306.05025 * 4 2 1 31 31 H 1.07993 * 119.95254 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.02445 * 180.27871 * 7 6 5 33 33 H 0.96995 * 119.99873 * 33.38789 * 9 8 7 34 34 H 0.96994 * 120.00643 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.04609 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9728 6 6 0.5656 -2.7501 1.6693 7 6 0.2306 -4.0807 1.5167 8 6 0.9786 -4.8921 0.6707 9 7 0.6460 -6.2387 0.5189 10 6 1.6143 -7.1526 0.3101 11 8 2.7846 -6.8194 0.3498 12 6 1.2594 -8.5438 0.0363 13 1 0.2213 -8.8394 0.0008 14 6 2.2662 -9.4941 -0.1802 15 7 3.5219 -9.1366 -0.1378 16 14 1.8126 -11.2719 -0.5309 17 1 1.6604 -11.4644 -1.9954 18 1 2.8843 -12.1657 -0.0229 19 1 0.5326 -11.5992 0.1471 20 6 2.0581 -4.3587 -0.0235 21 6 2.3838 -3.0243 0.1289 22 17 3.7314 -2.3561 -0.7378 23 1 -0.3633 0.4512 0.9232 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0827 1.3433 -0.0710 27 1 1.5898 1.9164 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 3.0797 -0.6610 1.1756 30 1 1.5611 -0.3872 2.0627 31 1 -0.0121 -2.1210 2.3301 32 1 -0.6089 -4.4920 2.0575 33 1 -0.2821 -6.5169 0.5634 34 1 4.2189 -9.7943 -0.2880 35 1 2.6410 -4.9859 -0.6817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280216357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = -15.557331 kcal Electronic energy + Delta-G solvation = -19473.859649 eV Core-core repulsion = 16304.560798 eV Total energy + Delta-G solvation = -3169.298851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.53804 -37.84006 -36.50145 -35.81280 -33.50759 -32.49831 -30.30496 -30.13061 -27.56499 -26.96369 -25.48147 -22.49217 -22.40253 -20.83293 -19.81161 -17.66932 -16.57774 -15.76401 -15.59196 -15.44714 -15.30142 -14.52119 -14.19751 -14.03032 -13.61830 -13.28931 -12.93017 -12.60323 -12.41065 -12.39080 -12.02113 -11.71364 -11.58419 -11.38120 -11.24450 -11.15837 -10.97159 -10.82320 -10.65087 -10.37178 -10.26604 -9.30740 -8.91784 -8.32045 -8.28582 -7.79106 -7.15595 -6.37909 -4.85855 1.68677 1.82406 2.70169 3.05722 3.12847 3.16081 3.87903 3.96801 4.25305 4.48565 4.55282 5.00283 5.05640 5.18125 5.30330 5.39697 5.48304 5.56285 5.60333 5.66644 5.74697 5.79686 5.95184 6.05854 6.08896 6.31784 6.61718 6.80316 6.91668 7.05240 7.07561 7.16483 7.26167 7.67058 7.96635 8.10434 8.81564 9.14921 10.33653 10.52819 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034699 B = 0.004025 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.750857 B = 6955.494859 C = 7509.025569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.027 3.973 4 C 0.104 3.896 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.176 4.176 8 C 0.208 3.792 9 N -0.698 5.698 10 C 0.540 3.460 11 O -0.556 6.556 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.086 3.914 15 N -0.757 5.757 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.125 4.125 21 C 0.015 3.985 22 Cl -0.075 7.075 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 14.491 1.629 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.121 4.121 4 C -0.023 4.023 5 C -0.130 4.130 6 C -0.101 4.101 7 C -0.198 4.198 8 C 0.108 3.892 9 N -0.341 5.341 10 C 0.347 3.653 11 O -0.438 6.438 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.385 5.385 16 Si 0.737 3.263 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.147 4.147 21 C -0.013 4.013 22 Cl -0.046 7.046 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.765 14.385 1.098 15.194 hybrid contribution -0.869 -0.617 0.584 1.215 sum -5.635 13.768 1.681 14.971 Atomic orbital electron populations 1.22397 0.87480 1.02744 0.99737 1.61942 1.07898 1.13035 1.43155 1.22354 1.00860 0.88891 1.00038 1.20913 1.00508 0.89847 0.91067 1.19228 0.98089 0.94830 1.00854 1.20546 0.95961 0.94700 0.98906 1.20907 1.03464 0.94456 1.00937 1.17806 0.93963 0.85431 0.91979 1.44224 1.11334 1.03632 1.74871 1.18431 0.83950 0.85442 0.77474 1.90661 1.18030 1.80412 1.54675 1.20847 0.94148 0.91393 1.50936 0.90936 1.25748 0.94366 1.00551 0.92871 1.69977 1.00054 1.35077 1.33370 0.86272 0.79112 0.81601 0.79273 1.19532 1.20276 1.18767 1.21215 0.99428 0.92660 1.01387 1.20473 0.91342 0.92986 0.96471 1.98321 1.44791 1.85746 1.75713 0.96066 0.91801 0.90804 0.91416 0.91544 0.96050 0.89899 0.94354 0.86249 0.86006 0.77115 0.91641 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.28 60.06 0.56 0.83 16 2 N -0.54 -6.65 5.01 -252.73 -1.27 -7.91 16 3 C 0.03 0.26 9.57 60.07 0.57 0.84 16 4 C 0.10 1.36 4.50 -4.98 -0.02 1.34 16 5 C -0.13 -2.00 4.57 -104.52 -0.48 -2.48 16 6 C -0.08 -1.20 8.74 -39.61 -0.35 -1.54 16 7 C -0.18 -2.88 9.97 -39.35 -0.39 -3.27 16 8 C 0.21 4.24 6.27 -83.77 -0.53 3.72 16 9 N -0.70 -15.23 5.32 -11.20 -0.06 -15.29 16 10 C 0.54 14.69 7.47 -13.08 -0.10 14.59 16 11 O -0.56 -17.13 12.70 5.15 0.07 -17.06 16 12 C -0.54 -14.40 9.54 -35.69 -0.34 -14.74 16 13 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 15 N -0.76 -21.77 11.82 55.55 0.66 -21.11 16 16 Si 0.91 19.26 29.56 -169.99 -5.02 14.24 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 C -0.13 -2.69 8.43 -39.32 -0.33 -3.02 16 21 C 0.02 0.28 6.31 -39.53 -0.25 0.03 16 22 Cl -0.07 -1.29 27.50 -51.86 -1.43 -2.72 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 25 H 0.07 0.90 6.66 -51.93 -0.35 0.56 16 26 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.11 7.27 -51.93 -0.38 0.73 16 30 H 0.04 0.45 7.98 -51.93 -0.41 0.03 16 31 H 0.12 1.39 8.03 -52.49 -0.42 0.97 16 32 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.40 7.27 8.79 -40.82 -0.36 6.91 16 34 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 35 H 0.15 3.70 6.42 -52.49 -0.34 3.36 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -31.65 313.38 -8.41 -40.06 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.33 Total: 6.59 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.75 Total: -1.52 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.67 Total: -44.31 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.07 Total: -17.06 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.43 Total: -2.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.65 -8.41 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280216357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.502 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds