Wall clock time and date at job start Tue Mar 31 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 N 1.46493 * 109.47427 * 124.99919 * 3 2 1 5 5 C 1.46494 * 120.00444 * 269.72511 * 4 3 2 6 6 C 1.50694 * 109.47248 * 270.27463 * 5 4 3 7 7 H 1.07999 * 119.99904 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00419 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99411 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47279 * 90.00270 * 10 8 6 12 12 H 1.48505 * 109.46775 * 209.99777 * 10 8 6 13 13 H 1.48495 * 109.47628 * 329.99523 * 10 8 6 14 14 C 1.34784 * 119.99864 * 89.99800 * 4 3 2 15 15 O 1.21579 * 120.00114 * 179.72787 * 14 4 3 16 16 N 1.34777 * 119.99908 * 359.72514 * 14 4 3 17 17 C 1.39075 * 120.00246 * 179.97438 * 16 14 4 18 18 N 1.29896 * 125.65141 * 0.03030 * 17 16 14 19 19 N 1.26251 * 117.65950 * 179.97438 * 18 17 16 20 20 C 1.29503 * 116.58369 * 359.97438 * 19 18 17 21 21 C 1.50695 * 126.14502 * 179.97438 * 20 19 18 22 22 S 1.71303 * 125.65707 * 179.71781 * 17 16 14 23 23 H 1.08001 * 119.99797 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99725 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00333 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47046 * 4.99693 * 3 2 1 27 27 H 1.08996 * 109.46984 * 245.00291 * 3 2 1 28 28 H 1.09003 * 109.47006 * 30.27410 * 5 4 3 29 29 H 1.09004 * 109.47665 * 150.27102 * 5 4 3 30 30 H 0.96993 * 119.99970 * 180.02562 * 9 8 6 31 31 H 0.96999 * 120.00047 * 0.02562 * 16 14 4 32 32 H 1.09000 * 109.47716 * 90.02530 * 21 20 19 33 33 H 1.09000 * 109.47245 * 210.02404 * 21 20 19 34 34 H 1.09002 * 109.47021 * 330.02050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5608 1.8706 2.4231 6 6 2.8454 3.3496 2.4715 7 1 3.3034 3.8394 1.6249 8 6 2.5211 4.0777 3.5967 9 7 2.7700 5.3683 3.6391 10 14 1.7296 3.2304 5.0612 11 1 2.7874 2.7450 5.9835 12 1 0.8534 4.1931 5.7759 13 1 0.9186 2.0797 4.5887 14 6 4.2498 0.8663 0.9823 15 8 5.0233 0.8932 1.9199 16 7 4.6481 0.3708 -0.2061 17 6 5.9442 -0.1093 -0.3601 18 7 6.8574 -0.1334 0.5634 19 7 7.9879 -0.6049 0.2575 20 6 8.1310 -1.0242 -0.9593 21 6 9.3806 -1.6226 -1.5521 22 16 6.5989 -0.7738 -1.7969 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6212 1.4027 -0.9314 28 1 1.4910 1.7022 2.5468 29 1 3.1025 1.3699 3.2256 30 1 2.5422 5.8804 4.4308 31 1 4.0310 0.3496 -0.9542 32 1 9.3691 -2.7032 -1.4097 33 1 9.4213 -1.3971 -2.6178 34 1 10.2555 -1.2002 -1.0579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291850286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:45 Heat of formation + Delta-G solvation = 53.827896 kcal Electronic energy + Delta-G solvation = -19550.610423 eV Core-core repulsion = 16418.656799 eV Total energy + Delta-G solvation = -3131.953624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42457 -41.26982 -37.56875 -36.56562 -35.00018 -33.88294 -33.30563 -30.50971 -29.06117 -27.13716 -26.24490 -24.59186 -22.56213 -21.23275 -20.99914 -19.76210 -19.13225 -18.93749 -18.19651 -17.31207 -16.88251 -16.34628 -15.97255 -15.80147 -15.21006 -15.04576 -14.59806 -14.35633 -14.17315 -13.96737 -13.58890 -13.39289 -13.24754 -13.00832 -12.57791 -12.42704 -12.25253 -11.96753 -11.76899 -11.70326 -11.37738 -10.84550 -10.82199 -10.55142 -10.38790 -9.96762 -9.46085 -8.34888 -6.40241 -0.53066 -0.49792 0.13423 1.15587 1.32533 1.37672 1.44758 1.50641 1.57714 2.14547 2.30342 2.68045 3.00070 3.33958 3.75027 3.96652 4.12436 4.23840 4.28614 4.64270 4.72350 4.77243 4.79725 4.81868 4.94349 5.03856 5.16210 5.34755 5.42066 5.60408 5.69618 5.85825 6.22090 6.60838 6.68521 7.20032 7.37133 7.71195 8.82168 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.004846 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.872008 B = 5776.638000 C = 6742.291911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.192 4.192 3 C 0.128 3.872 4 N -0.598 5.598 5 C 0.245 3.755 6 C -0.538 4.538 7 H 0.029 0.971 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.281 1.281 12 H -0.273 1.273 13 H -0.234 1.234 14 C 0.691 3.309 15 O -0.580 6.580 16 N -0.623 5.623 17 C 0.222 3.778 18 N -0.331 5.331 19 N -0.279 5.279 20 C 0.002 3.998 21 C -0.069 4.069 22 S 0.194 5.806 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.436 0.564 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -17.754 -18.303 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.211 4.211 3 C 0.006 3.994 4 N -0.332 5.332 5 C 0.122 3.878 6 C -0.577 4.577 7 H 0.047 0.953 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.206 1.206 12 H -0.198 1.198 13 H -0.157 1.157 14 C 0.390 3.610 15 O -0.454 6.454 16 N -0.281 5.281 17 C -0.150 4.150 18 N -0.175 5.175 19 N -0.115 5.115 20 C -0.281 4.281 21 C -0.130 4.130 22 S 0.433 5.567 23 H 0.122 0.878 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.279 0.721 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.926 -17.434 -17.137 24.522 hybrid contribution -0.485 0.607 0.840 1.144 sum 1.442 -16.827 -16.297 23.469 Atomic orbital electron populations 1.24118 0.95280 1.03271 0.96724 1.23255 0.96978 0.97592 1.03258 1.20915 0.92859 0.97537 0.88054 1.47185 1.09327 1.62427 1.14263 1.19282 0.95685 0.91848 0.80937 1.21553 1.40757 0.93358 1.01996 0.95262 1.25805 0.95898 0.95302 1.01424 1.70040 1.49327 1.08383 1.30682 0.85761 0.79034 0.79539 0.78894 1.20648 1.19761 1.15678 1.16141 0.83189 0.79043 0.82621 1.91018 1.53407 1.60833 1.40124 1.41993 1.09054 1.62897 1.14204 1.25930 0.92057 1.00982 0.95996 1.71525 0.96562 1.20554 1.28831 1.71403 1.12415 1.11972 1.15678 1.30889 1.01492 1.03722 0.91951 1.20667 0.88370 1.01921 1.02046 1.84058 1.06979 1.57060 1.08621 0.87808 0.86271 0.86841 0.89064 0.88560 0.92313 0.96446 0.92229 0.72143 0.87061 0.86625 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.19 -4.27 9.85 25.64 0.25 -4.02 16 3 C 0.13 3.63 5.61 85.64 0.48 4.11 16 4 N -0.60 -24.57 2.44 -848.60 -2.07 -26.64 16 5 C 0.24 12.07 4.23 85.63 0.36 12.43 16 6 C -0.54 -32.05 9.94 25.60 0.25 -31.80 16 7 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 8 C 0.01 0.83 5.47 84.66 0.46 1.30 16 9 N -0.94 -60.53 13.96 21.45 0.30 -60.23 16 10 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.23 -9.87 6.54 99.48 0.65 -9.22 16 14 C 0.69 30.44 8.24 179.05 1.48 31.91 16 15 O -0.58 -32.59 14.60 -3.96 -0.06 -32.65 16 16 N -0.62 -20.20 5.27 -326.98 -1.72 -21.92 16 17 C 0.22 7.34 8.14 179.10 1.46 8.80 16 18 N -0.33 -13.90 9.73 -59.10 -0.58 -14.48 16 19 N -0.28 -9.83 11.65 -47.68 -0.56 -10.39 16 20 C 0.00 0.06 7.80 88.45 0.69 0.74 16 21 C -0.07 -0.74 10.51 71.23 0.75 0.00 16 22 S 0.19 3.73 23.31 -56.49 -1.32 2.41 16 23 H 0.10 1.93 7.84 -2.91 -0.02 1.91 16 24 H 0.12 1.75 8.06 -2.91 -0.02 1.72 16 25 H 0.11 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.09 2.72 7.72 -2.39 -0.02 2.70 16 27 H 0.10 2.11 6.37 -2.39 -0.02 2.09 16 28 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 29 H 0.02 0.94 6.85 -2.38 -0.02 0.92 16 30 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.44 9.73 6.56 -92.71 -0.61 9.12 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -89.94 312.66 3.51 -86.44 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.47 Total: 8.99 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.15 Total: 21.51 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -4.63 Total: -133.66 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.32 Total: 2.41 kcal Total: -89.94 3.51 -86.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291850286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.266 kcal (2) G-P(sol) polarization free energy of solvation -89.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds