Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99597 * 2 1 4 4 N 1.46502 * 109.46888 * 125.21355 * 3 2 1 5 5 C 1.46494 * 119.99944 * 261.01044 * 4 3 2 6 6 C 1.50700 * 109.47247 * 270.00322 * 5 4 3 7 7 H 1.08001 * 120.00568 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00097 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00287 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00052 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47351 * 119.99760 * 10 8 6 13 13 H 1.48503 * 109.47239 * 239.99519 * 10 8 6 14 14 C 1.34775 * 119.99813 * 81.01689 * 4 3 2 15 15 O 1.21697 * 119.99695 * 179.39216 * 14 4 3 16 16 C 1.46667 * 120.00250 * 359.38485 * 14 4 3 17 17 C 1.37889 * 126.22218 * 350.14776 * 16 14 4 18 18 C 1.39892 * 107.09904 * 180.02562 * 17 16 14 19 19 Cl 1.73596 * 126.07890 * 180.02562 * 18 17 16 20 20 C 1.35523 * 107.84595 * 359.77256 * 18 17 16 21 21 N 1.35627 * 108.85378 * 0.36977 * 20 18 17 22 22 C 1.46500 * 125.67992 * 179.88826 * 21 20 18 23 23 H 1.07998 * 119.99815 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00306 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.00204 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47254 * 5.21067 * 3 2 1 27 27 H 1.08997 * 109.47161 * 245.21046 * 3 2 1 28 28 H 1.09003 * 109.47411 * 30.00124 * 5 4 3 29 29 H 1.09001 * 109.47435 * 150.00434 * 5 4 3 30 30 H 0.97000 * 120.00441 * 180.02562 * 9 8 6 31 31 H 1.08003 * 126.45271 * 0.04773 * 17 16 14 32 32 H 1.08000 * 125.57502 * 180.22864 * 20 18 17 33 33 H 1.08997 * 109.47045 * 264.39518 * 22 21 20 34 34 H 1.08997 * 109.47134 * 144.38552 * 22 21 20 35 35 H 1.08998 * 109.46580 * 24.39488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9974 1.3299 1.1285 5 6 2.6381 2.0350 2.3613 6 6 3.0998 3.4668 2.2739 7 1 3.6102 3.8166 1.3887 8 6 2.8715 4.3302 3.3244 9 7 2.2503 3.9043 4.4025 10 14 3.4431 6.1052 3.2157 11 1 4.1102 6.3313 1.9084 12 1 2.2724 7.0107 3.3376 13 1 4.4017 6.3848 4.3149 14 6 4.1871 0.7040 1.0324 15 8 4.9675 0.7339 1.9658 16 6 4.5413 -0.0132 -0.1970 17 6 3.6958 -0.2923 -1.2499 18 6 4.4442 -0.9883 -2.2050 19 17 3.8604 -1.5787 -3.7295 20 6 5.7076 -1.1148 -1.7312 21 7 5.7780 -0.5306 -0.5092 22 6 6.9729 -0.4570 0.3352 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3588 2.1315 0.0933 27 1 2.6183 1.4044 -0.9329 28 1 1.5562 2.0094 2.4924 29 1 3.1186 1.5495 3.2108 30 1 2.0894 4.5117 5.1414 31 1 2.6523 -0.0237 -1.3235 32 1 6.5243 -1.6032 -2.2420 33 1 6.9612 -1.2768 1.0535 34 1 6.9828 0.4935 0.8686 35 1 7.8636 -0.5330 -0.2884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292525896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = 57.082576 kcal Electronic energy + Delta-G solvation = -20051.389931 eV Core-core repulsion = 16885.240984 eV Total energy + Delta-G solvation = -3166.148948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42873 -38.61403 -36.40210 -36.02254 -33.36805 -32.55689 -32.06060 -29.61649 -27.25410 -26.55580 -25.57663 -23.43970 -21.23280 -20.80402 -19.81997 -18.58669 -17.08569 -16.53956 -15.77781 -15.46083 -15.28284 -14.97021 -14.35559 -14.07470 -13.92724 -13.54939 -13.08605 -12.84170 -12.79946 -12.30944 -12.28774 -12.09972 -11.40948 -11.35976 -11.19389 -11.04753 -10.88323 -10.69854 -10.57368 -10.21115 -9.66354 -9.24713 -9.15909 -8.51008 -8.46222 -8.15282 -7.72721 -6.07367 -4.12305 1.69526 2.17952 2.39810 2.57686 3.01868 3.28086 3.35706 3.40021 3.84011 4.03175 4.42623 4.83440 4.90366 4.99284 5.24089 5.27219 5.29552 5.35114 5.43939 5.63829 5.68398 5.81739 5.96915 6.09288 6.19989 6.55040 6.80188 6.87360 6.90963 7.03645 7.15911 7.38373 7.48251 7.88777 8.18360 8.29296 8.82510 8.98400 9.52809 11.00700 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.005161 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.992848 B = 5423.953530 C = 6148.299110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.181 4.181 3 C 0.118 3.882 4 N -0.573 5.573 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.574 3.426 15 O -0.545 6.545 16 C -0.016 4.016 17 C -0.168 4.168 18 C -0.124 4.124 19 Cl -0.060 7.060 20 C 0.016 3.984 21 N -0.405 5.405 22 C 0.073 3.927 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -10.452 -13.376 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.200 4.200 3 C -0.005 4.005 4 N -0.303 5.303 5 C 0.130 3.870 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.361 3.639 15 O -0.425 6.425 16 C -0.131 4.131 17 C -0.193 4.193 18 C -0.157 4.157 19 Cl -0.031 7.031 20 C -0.120 4.120 21 N -0.078 5.078 22 C -0.068 4.068 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.190 0.810 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.537 -10.351 -12.535 16.637 hybrid contribution 0.265 0.812 -0.197 0.877 sum 3.802 -9.539 -12.732 16.357 Atomic orbital electron populations 1.23864 0.95745 1.01879 0.99742 1.23558 0.96466 0.99436 1.00509 1.21177 0.93139 0.95394 0.90798 1.47935 1.14579 1.50637 1.17113 1.19379 0.96282 0.91164 0.80193 1.21460 1.37902 0.94682 1.02525 0.92298 1.24923 0.95079 0.98967 0.95032 1.69941 1.41605 1.35745 1.05965 0.86442 0.78442 0.84402 0.78142 1.19789 1.20904 1.20894 1.16850 0.82772 0.79272 0.84957 1.90774 1.49449 1.62675 1.39592 1.20528 0.85580 1.08065 0.98897 1.22616 1.01619 1.02856 0.92209 1.19958 0.94488 1.10172 0.91084 1.98299 1.88519 1.87537 1.28777 1.21598 0.98265 1.04559 0.87562 1.43800 1.09331 1.40413 1.14253 1.22245 0.83967 1.05991 0.94578 0.88576 0.88214 0.86779 0.89044 0.89154 0.94528 0.93646 0.92724 0.79955 0.81036 0.90196 0.87938 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.18 -2.61 7.51 -36.03 -0.27 -2.88 16 3 C 0.12 1.98 5.41 -5.19 -0.03 1.96 16 4 N -0.57 -12.25 2.47 -177.99 -0.44 -12.69 16 5 C 0.25 6.42 5.12 -5.20 -0.03 6.39 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.57 12.26 7.54 -12.86 -0.10 12.17 16 15 O -0.55 -13.34 14.55 5.19 0.08 -13.26 16 16 C -0.02 -0.28 6.72 -81.98 -0.55 -0.83 16 17 C -0.17 -2.53 7.33 -39.09 -0.29 -2.82 16 18 C -0.12 -1.67 6.66 -39.93 -0.27 -1.94 16 19 Cl -0.06 -0.71 29.30 -51.86 -1.52 -2.23 16 20 C 0.02 0.21 11.35 -16.84 -0.19 0.01 16 21 N -0.41 -5.92 3.16 -120.19 -0.38 -6.30 16 22 C 0.07 0.89 10.33 59.85 0.62 1.51 16 23 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 24 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 25 H 0.11 1.66 6.64 -52.49 -0.35 1.31 16 26 H 0.09 1.54 7.66 -51.93 -0.40 1.14 16 27 H 0.09 1.39 5.20 -51.93 -0.27 1.12 16 28 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.18 2.57 3.05 -52.48 -0.16 2.41 16 32 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.52 6.89 -51.93 -0.36 1.16 16 35 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -31.97 312.04 -6.93 -38.90 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.99 Total: 1.36 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.10 Total: -1.62 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.08 Total: -44.45 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.52 Total: -2.23 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.97 -6.93 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292525896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.986 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds