Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99597 * 2 1 4 4 N 1.46502 * 109.46888 * 125.21355 * 3 2 1 5 5 C 1.46494 * 119.99944 * 261.01044 * 4 3 2 6 6 C 1.50700 * 109.47247 * 270.00322 * 5 4 3 7 7 H 1.08001 * 120.00568 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00097 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00287 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00052 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47351 * 119.99760 * 10 8 6 13 13 H 1.48503 * 109.47239 * 239.99519 * 10 8 6 14 14 C 1.34775 * 119.99813 * 81.01689 * 4 3 2 15 15 O 1.21697 * 119.99695 * 179.39216 * 14 4 3 16 16 C 1.46667 * 120.00250 * 359.38485 * 14 4 3 17 17 C 1.37889 * 126.22218 * 350.14776 * 16 14 4 18 18 C 1.39892 * 107.09904 * 180.02562 * 17 16 14 19 19 Cl 1.73596 * 126.07890 * 180.02562 * 18 17 16 20 20 C 1.35523 * 107.84595 * 359.77256 * 18 17 16 21 21 N 1.35627 * 108.85378 * 0.36977 * 20 18 17 22 22 C 1.46500 * 125.67992 * 179.88826 * 21 20 18 23 23 H 1.07998 * 119.99815 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00306 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.00204 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47254 * 5.21067 * 3 2 1 27 27 H 1.08997 * 109.47161 * 245.21046 * 3 2 1 28 28 H 1.09003 * 109.47411 * 30.00124 * 5 4 3 29 29 H 1.09001 * 109.47435 * 150.00434 * 5 4 3 30 30 H 0.97000 * 120.00441 * 180.02562 * 9 8 6 31 31 H 1.08003 * 126.45271 * 0.04773 * 17 16 14 32 32 H 1.08000 * 125.57502 * 180.22864 * 20 18 17 33 33 H 1.08997 * 109.47045 * 264.39518 * 22 21 20 34 34 H 1.08997 * 109.47134 * 144.38552 * 22 21 20 35 35 H 1.08998 * 109.46580 * 24.39488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9974 1.3299 1.1285 5 6 2.6381 2.0350 2.3613 6 6 3.0998 3.4668 2.2739 7 1 3.6102 3.8166 1.3887 8 6 2.8715 4.3302 3.3244 9 7 2.2503 3.9043 4.4025 10 14 3.4431 6.1052 3.2157 11 1 4.1102 6.3313 1.9084 12 1 2.2724 7.0107 3.3376 13 1 4.4017 6.3848 4.3149 14 6 4.1871 0.7040 1.0324 15 8 4.9675 0.7339 1.9658 16 6 4.5413 -0.0132 -0.1970 17 6 3.6958 -0.2923 -1.2499 18 6 4.4442 -0.9883 -2.2050 19 17 3.8604 -1.5787 -3.7295 20 6 5.7076 -1.1148 -1.7312 21 7 5.7780 -0.5306 -0.5092 22 6 6.9729 -0.4570 0.3352 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3588 2.1315 0.0933 27 1 2.6183 1.4044 -0.9329 28 1 1.5562 2.0094 2.4924 29 1 3.1186 1.5495 3.2108 30 1 2.0894 4.5117 5.1414 31 1 2.6523 -0.0237 -1.3235 32 1 6.5243 -1.6032 -2.2420 33 1 6.9612 -1.2768 1.0535 34 1 6.9828 0.4935 0.8686 35 1 7.8636 -0.5330 -0.2884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292525896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = 38.077968 kcal Electronic energy + Delta-G solvation = -20052.214033 eV Core-core repulsion = 16885.240984 eV Total energy + Delta-G solvation = -3166.973049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61709 -40.17746 -37.65280 -37.25903 -35.28217 -33.76484 -33.60210 -31.04341 -28.98473 -27.74500 -26.88450 -25.32527 -22.62682 -22.12646 -20.94348 -19.90156 -18.65098 -18.40607 -17.30784 -16.93777 -16.70169 -16.23076 -16.02269 -15.50632 -15.08681 -14.77277 -14.44284 -14.25336 -14.23339 -13.80586 -13.57044 -13.29187 -13.23559 -12.96821 -12.67163 -12.42171 -12.33526 -12.21765 -12.18915 -11.74194 -11.62378 -10.81707 -10.65853 -10.38939 -9.63088 -9.60657 -9.17245 -8.23238 -6.38098 0.43426 1.13257 1.28479 1.36900 1.38535 1.49133 1.50931 1.85853 2.30367 2.41165 2.58268 3.06529 3.58384 3.92481 4.01688 4.04887 4.19015 4.26810 4.36589 4.42643 4.61090 4.73893 4.80589 4.88676 5.01016 5.05414 5.19192 5.43559 5.52172 5.69744 5.72953 5.75409 5.91366 6.03420 6.10874 6.62025 6.70786 7.21867 7.37317 8.84114 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.005161 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.992848 B = 5423.953530 C = 6148.299110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.199 4.199 3 C 0.119 3.881 4 N -0.582 5.582 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.281 1.281 14 C 0.567 3.433 15 O -0.593 6.593 16 C -0.059 4.059 17 C -0.150 4.150 18 C -0.141 4.141 19 Cl -0.041 7.041 20 C 0.047 3.953 21 N -0.410 5.410 22 C 0.071 3.929 23 H 0.121 0.879 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.028 0.972 29 H 0.001 0.999 30 H 0.268 0.732 31 H 0.190 0.810 32 H 0.216 0.784 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -10.985 -15.929 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.218 4.218 3 C -0.003 4.003 4 N -0.310 5.310 5 C 0.146 3.854 6 C -0.581 4.581 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.358 3.642 15 O -0.477 6.477 16 C -0.173 4.173 17 C -0.176 4.176 18 C -0.173 4.173 19 Cl -0.013 7.013 20 C -0.090 4.090 21 N -0.082 5.082 22 C -0.069 4.069 23 H 0.139 0.861 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.046 0.954 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.206 0.794 32 H 0.233 0.767 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.822 -10.894 -15.122 19.026 hybrid contribution 0.137 0.877 0.516 1.026 sum 3.959 -10.018 -14.607 18.149 Atomic orbital electron populations 1.24131 0.95096 1.03320 0.96430 1.23323 0.96959 0.98082 1.03446 1.21362 0.92569 0.96758 0.89579 1.47873 1.15836 1.50403 1.16890 1.18808 0.94919 0.90521 0.81186 1.21682 1.38081 0.95805 1.02528 0.93014 1.25814 0.94952 1.03513 0.94504 1.70052 1.42417 1.37456 1.06663 0.85370 0.78330 0.78978 0.78138 1.19314 1.19324 1.20649 1.17415 0.81991 0.78876 0.85967 1.90726 1.50752 1.64567 1.41623 1.19930 0.87851 1.11193 0.98276 1.22709 1.01732 1.01524 0.91624 1.20035 0.94822 1.10660 0.91828 1.98308 1.88423 1.87252 1.27291 1.22324 0.99011 1.01718 0.85942 1.44022 1.08904 1.40159 1.15126 1.22348 0.84887 1.04263 0.95365 0.86107 0.87711 0.86764 0.89592 0.87801 0.95416 0.98048 0.92320 0.79386 0.76705 0.89989 0.91276 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 14.32 67.77 0.97 -2.63 16 2 C -0.20 -5.64 7.51 25.64 0.19 -5.45 16 3 C 0.12 4.05 5.41 85.63 0.46 4.52 16 4 N -0.58 -26.06 2.47 -835.24 -2.06 -28.13 16 5 C 0.27 14.59 5.12 85.63 0.44 15.02 16 6 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 10 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 C 0.57 25.46 7.54 86.44 0.65 26.11 16 15 O -0.59 -31.07 14.55 -4.34 -0.06 -31.13 16 16 C -0.06 -2.05 6.72 40.35 0.27 -1.78 16 17 C -0.15 -4.34 7.33 22.59 0.17 -4.17 16 18 C -0.14 -3.41 6.66 22.04 0.15 -3.27 16 19 Cl -0.04 -0.85 29.30 -2.72 -0.08 -0.93 16 20 C 0.05 1.02 11.35 83.48 0.95 1.97 16 21 N -0.41 -11.40 3.16 -534.18 -1.69 -13.09 16 22 C 0.07 1.69 10.33 127.77 1.32 3.01 16 23 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 24 H 0.10 2.39 7.84 -2.91 -0.02 2.37 16 25 H 0.11 3.25 6.64 -2.91 -0.02 3.23 16 26 H 0.09 2.96 7.66 -2.39 -0.02 2.94 16 27 H 0.10 3.20 5.20 -2.39 -0.01 3.18 16 28 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 29 H 0.00 0.09 7.43 -2.39 -0.02 0.07 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.19 5.09 3.05 -2.91 -0.01 5.08 16 32 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.13 6.89 -2.39 -0.02 2.12 16 35 H 0.13 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -72.83 312.04 5.79 -67.04 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.11 Total: 11.61 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.27 Total: 3.21 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.47 Total: -96.71 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.06 Total: -31.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -72.83 5.79 -67.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292525896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.116 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds