Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.50699 * 109.46956 * 240.00144 * 2 1 3 5 5 H 1.07997 * 119.99542 * 245.35129 * 4 2 1 6 6 C 1.37873 * 120.00149 * 65.35830 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.15122 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.15151 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46500 * 109.46773 * 119.99644 * 2 1 3 13 13 C 1.46492 * 119.99956 * 60.00742 * 12 2 1 14 14 C 1.34776 * 119.99725 * 239.99564 * 12 2 1 15 15 O 1.21281 * 120.00347 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99873 * 180.02562 * 14 12 2 17 17 C 1.50695 * 109.47557 * 180.02562 * 16 14 12 18 18 C 1.38168 * 120.42866 * 264.73262 * 17 16 14 19 19 N 1.31880 * 120.77773 * 179.67814 * 18 17 16 20 20 C 1.31904 * 121.75639 * 0.62742 * 19 18 17 21 21 C 1.38123 * 120.78191 * 359.66003 * 20 19 18 22 22 C 1.38778 * 120.42923 * 84.99839 * 17 16 14 23 23 Cl 1.73608 * 120.80135 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.46614 * 54.89641 * 1 2 3 25 25 H 1.09000 * 109.46775 * 174.88843 * 1 2 3 26 26 H 1.08994 * 109.46964 * 294.89239 * 1 2 3 27 27 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47450 * 89.99525 * 13 12 2 29 29 H 1.09000 * 109.47030 * 209.99811 * 13 12 2 30 30 H 1.09001 * 109.47202 * 329.99389 * 13 12 2 31 31 H 1.09000 * 109.47361 * 300.01135 * 16 14 12 32 32 H 1.09001 * 109.46794 * 60.00358 * 16 14 12 33 33 H 1.08005 * 119.61184 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.61137 * 179.67875 * 20 19 18 35 35 H 1.08002 * 120.43075 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5801 -1.6361 -1.1337 6 6 1.7928 -0.1784 -2.4797 7 7 1.2158 0.9978 -2.5939 8 14 2.2878 -1.1285 -4.0100 9 1 1.2110 -2.0865 -4.3678 10 1 2.5010 -0.1811 -5.1335 11 1 3.5449 -1.8733 -3.7452 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0860 1.1257 1.8915 16 6 3.2960 -0.7460 3.3136 17 6 4.1326 0.2014 4.1342 18 6 5.5072 0.2205 3.9957 19 7 6.2455 1.0511 4.7057 20 6 5.7105 1.8825 5.5789 21 6 4.3439 1.9169 5.7767 22 6 3.5329 1.0620 5.0429 23 17 1.8100 1.0697 5.2562 24 1 -0.3632 0.5910 -0.8408 25 1 -0.3633 -1.0236 -0.0916 26 1 -0.3633 0.4325 0.9321 27 1 1.0469 1.3719 -3.4728 28 1 2.4159 -2.7376 0.9717 29 1 1.6238 -2.2851 2.5002 30 1 0.6905 -2.3002 0.9847 31 1 2.4484 -1.0890 3.9069 32 1 3.9017 -1.6021 3.0166 33 1 5.9823 -0.4493 3.2941 34 1 6.3484 2.5443 6.1458 35 1 3.9118 2.6001 6.4928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293712465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = -7.782057 kcal Electronic energy + Delta-G solvation = -19862.884962 eV Core-core repulsion = 16693.923273 eV Total energy + Delta-G solvation = -3168.961689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42618 -38.88456 -36.72384 -35.38216 -33.44471 -32.70381 -31.86770 -29.78144 -27.59293 -26.10768 -25.17908 -23.66712 -22.91423 -20.90176 -18.35677 -17.39286 -16.88852 -16.68022 -16.24739 -15.46252 -14.99629 -14.63684 -14.31110 -13.97647 -13.86001 -13.44099 -12.83083 -12.69870 -12.56009 -12.30190 -12.15269 -11.74015 -11.59212 -11.51303 -11.02964 -10.93754 -10.86539 -10.74235 -10.27155 -10.19625 -9.64490 -9.44284 -9.32212 -9.16707 -8.79086 -8.42627 -7.61180 -6.08166 -4.14399 0.97428 1.01560 1.95039 3.26607 3.32324 3.34415 3.38113 3.58349 4.01533 4.32669 4.40703 4.59380 4.67109 4.85840 5.14572 5.22665 5.26296 5.34142 5.56533 5.59085 5.68407 5.76710 5.96619 6.05697 6.26375 6.47631 6.71334 6.74391 6.99743 7.36179 7.52995 7.69668 7.84219 7.93208 8.16762 8.50942 8.84505 9.03873 9.51544 10.99185 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.004667 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.972761 B = 5997.704719 C = 6433.774065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.257 3.743 3 H 0.068 0.932 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.084 3.916 14 C 0.509 3.491 15 O -0.543 6.543 16 C -0.106 4.106 17 C -0.097 4.097 18 C 0.125 3.875 19 N -0.481 5.481 20 C 0.104 3.896 21 C -0.166 4.166 22 C 0.020 3.980 23 Cl -0.050 7.050 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -3.857 16.497 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.157 3.843 3 H 0.086 0.914 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.295 3.705 15 O -0.421 6.421 16 C -0.147 4.147 17 C -0.100 4.100 18 C -0.032 4.032 19 N -0.189 5.189 20 C -0.053 4.053 21 C -0.186 4.186 22 C -0.014 4.014 23 Cl -0.021 7.021 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.933 -3.100 16.128 16.888 hybrid contribution -0.979 -0.571 -0.843 1.413 sum 2.954 -3.671 15.285 15.995 Atomic orbital electron populations 1.22025 0.98558 0.99804 0.99542 1.18948 0.90468 0.94936 0.79921 0.91380 1.21271 1.36288 1.08644 0.90406 0.92276 1.24904 0.95099 0.94714 0.98981 1.69941 1.42558 1.15884 1.24028 0.86541 0.78884 0.79669 0.82479 1.20530 1.21179 1.19984 1.48201 1.48984 1.11619 1.23568 1.21590 1.01728 0.83308 0.99349 1.20007 0.79509 0.87132 0.83850 1.90684 1.58008 1.16852 1.76583 1.20762 1.00234 0.97962 0.95749 1.20344 0.95462 0.97934 0.96283 1.22679 0.89074 0.95624 0.95844 1.67665 1.40575 1.04778 1.05883 1.22722 0.91979 0.95829 0.94731 1.22038 0.94813 1.00114 1.01667 1.21165 0.85832 0.97165 0.97276 1.98392 1.10016 1.97497 1.96149 0.90371 0.94784 0.96677 0.92680 0.93146 0.92966 0.90829 0.87935 0.87686 0.81954 0.82034 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.84 37.16 0.33 -2.97 16 2 C 0.26 6.52 2.51 -69.08 -0.17 6.34 16 3 H 0.07 2.04 6.88 -51.93 -0.36 1.68 16 4 C -0.53 -14.15 8.34 -34.44 -0.29 -14.44 16 5 H 0.06 1.55 7.52 -52.49 -0.39 1.16 16 6 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 7 N -0.89 -25.40 11.99 55.43 0.66 -24.73 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.30 2.75 -175.26 -0.48 -12.78 16 13 C 0.08 1.34 9.43 59.84 0.56 1.90 16 14 C 0.51 10.22 7.67 -10.99 -0.08 10.14 16 15 O -0.54 -13.29 15.36 5.56 0.09 -13.21 16 16 C -0.11 -1.52 3.96 -29.04 -0.12 -1.64 16 17 C -0.10 -1.41 4.39 -104.45 -0.46 -1.87 16 18 C 0.13 1.75 10.84 -17.56 -0.19 1.56 16 19 N -0.48 -6.72 10.36 -13.27 -0.14 -6.86 16 20 C 0.10 1.21 11.18 -17.56 -0.20 1.02 16 21 C -0.17 -1.95 9.94 -39.41 -0.39 -2.35 16 22 C 0.02 0.29 6.37 -39.17 -0.25 0.04 16 23 Cl -0.05 -0.68 27.61 -51.86 -1.43 -2.11 16 24 H 0.08 2.01 6.84 -51.93 -0.36 1.65 16 25 H 0.03 0.73 6.88 -51.93 -0.36 0.37 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 29 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 30 H 0.07 1.18 6.53 -51.93 -0.34 0.84 16 31 H 0.10 1.29 6.49 -51.93 -0.34 0.95 16 32 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 33 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -32.63 312.00 -7.11 -39.74 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.14 Total: -0.16 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.35 Total: -0.57 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.04 Total: -44.38 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.43 Total: -2.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.63 -7.11 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293712465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.959 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds