Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 C 1.34783 * 119.99826 * 120.00322 * 12 2 1 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00065 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47239 * 179.97438 * 16 14 12 18 18 C 1.38169 * 120.42752 * 264.72634 * 17 16 14 19 19 N 1.31879 * 120.77526 * 179.67998 * 18 17 16 20 20 C 1.31901 * 121.76044 * 0.63006 * 19 18 17 21 21 C 1.38126 * 120.78005 * 359.65383 * 20 19 18 22 22 C 1.38771 * 120.42702 * 84.99695 * 17 16 14 23 23 Cl 1.73599 * 120.80758 * 359.97438 * 22 17 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 29 29 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 30 30 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 31 31 H 1.08999 * 109.46819 * 299.99778 * 16 14 12 32 32 H 1.08998 * 109.47107 * 59.99963 * 16 14 12 33 33 H 1.08004 * 119.61113 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.61588 * 179.68192 * 20 19 18 35 35 H 1.07999 * 120.42847 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0859 1.1255 -1.8917 16 6 3.2950 -0.7460 -3.3141 17 6 4.1318 0.2013 -4.1347 18 6 3.5687 0.9046 -5.1822 19 7 4.2931 1.7400 -5.9008 20 6 5.5763 1.9294 -5.6612 21 6 6.2103 1.2575 -4.6344 22 6 5.4793 0.3743 -3.8515 23 17 6.2325 -0.4922 -2.5494 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9040 -0.5274 4.4375 28 1 0.7374 -2.1443 -1.9993 29 1 2.4628 -2.5819 -1.9864 30 1 1.5294 -2.5969 -0.4708 31 1 3.9004 -1.6026 -3.0178 32 1 2.4470 -1.0881 -3.9073 33 1 2.5218 0.7721 -5.4122 34 1 6.1378 2.6182 -6.2749 35 1 7.2611 1.4172 -4.4429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293712469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = 1.608067 kcal Electronic energy + Delta-G solvation = -19946.490542 eV Core-core repulsion = 16777.936039 eV Total energy + Delta-G solvation = -3168.554503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48875 -39.05411 -36.70563 -35.60110 -33.52402 -32.68342 -31.90918 -30.53957 -27.80290 -26.22325 -25.13949 -23.70929 -23.02314 -21.01989 -18.41819 -17.43249 -17.07510 -16.90755 -16.31339 -15.69864 -15.21256 -14.75314 -14.33235 -14.01713 -13.87746 -13.52529 -13.02824 -12.83139 -12.61978 -12.38443 -12.23967 -12.14928 -11.81395 -11.75352 -11.58373 -11.12748 -10.91201 -10.74548 -10.17157 -9.70306 -9.66464 -9.47659 -9.42732 -9.29109 -8.90046 -8.65147 -7.77271 -6.16643 -4.17252 0.92051 0.97762 1.97015 3.19928 3.22430 3.35875 3.38494 3.50716 3.87026 4.27109 4.33642 4.52928 4.62739 4.80437 5.04535 5.16234 5.20126 5.28708 5.48287 5.54327 5.63757 5.72864 5.89904 5.95995 6.22292 6.24660 6.33236 6.42094 6.46991 6.80540 7.09732 7.32637 7.60553 7.78472 8.13883 8.44469 8.80902 8.87251 9.44468 10.96018 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.005012 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.689385 B = 5585.444027 C = 5842.099050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.230 3.770 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.079 3.921 14 C 0.512 3.488 15 O -0.545 6.545 16 C -0.105 4.105 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.482 5.482 20 C 0.105 3.895 21 C -0.165 4.165 22 C 0.020 3.980 23 Cl -0.042 7.042 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.266 0.734 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -1.115 -17.365 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.298 3.702 15 O -0.423 6.423 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.034 4.034 19 N -0.190 5.190 20 C -0.052 4.052 21 C -0.186 4.186 22 C -0.015 4.015 23 Cl -0.013 7.013 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.924 -0.130 -17.599 18.031 hybrid contribution -0.121 0.066 1.235 1.243 sum 3.804 -0.064 -16.364 16.800 Atomic orbital electron populations 1.22441 0.99046 1.01085 0.99209 1.19286 0.89952 0.95209 0.82772 0.92021 1.21145 1.32688 1.14259 0.88465 0.90299 1.24854 0.95653 0.96538 0.95630 1.69871 1.45171 1.40197 0.97976 0.86925 0.80429 0.83895 0.77501 1.20376 1.22139 1.18841 1.47839 1.49236 1.11819 1.22776 1.21700 0.98944 0.82783 1.03011 1.20065 0.79178 0.87079 0.83893 1.90674 1.57904 1.17027 1.76678 1.20734 1.00290 0.98111 0.95422 1.20327 0.92585 0.99791 0.97578 1.22635 0.99855 0.90566 0.90353 1.67655 1.07195 1.15948 1.28244 1.22721 0.90649 0.96975 0.94854 1.22064 1.01929 0.97627 0.96937 1.21225 0.93159 0.95816 0.91277 1.98419 1.81275 1.74602 1.47014 0.93206 0.94875 0.92552 0.92427 0.93576 0.92460 0.89469 0.87559 0.87643 0.82084 0.82018 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.68 37.16 0.32 -3.07 16 2 C 0.23 5.48 2.23 -69.08 -0.15 5.32 16 3 H 0.06 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.42 8.57 -34.44 -0.30 -14.71 16 5 H 0.08 2.31 7.58 -52.49 -0.40 1.91 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 8 Si 0.88 21.87 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.59 -11.64 2.75 -175.26 -0.48 -12.12 16 13 C 0.08 1.22 9.24 59.85 0.55 1.77 16 14 C 0.51 9.79 7.67 -10.98 -0.08 9.70 16 15 O -0.54 -12.64 15.36 5.56 0.09 -12.56 16 16 C -0.10 -1.43 3.96 -29.04 -0.11 -1.55 16 17 C -0.10 -1.39 4.39 -104.45 -0.46 -1.85 16 18 C 0.12 1.60 10.84 -17.56 -0.19 1.41 16 19 N -0.48 -6.36 10.36 -13.27 -0.14 -6.50 16 20 C 0.10 1.17 11.18 -17.56 -0.20 0.98 16 21 C -0.17 -1.92 9.94 -39.40 -0.39 -2.31 16 22 C 0.02 0.28 6.37 -39.17 -0.25 0.03 16 23 Cl -0.04 -0.61 27.61 -51.86 -1.43 -2.05 16 24 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.10 7.67 -51.93 -0.40 0.71 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 30 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16 31 H 0.11 1.34 6.49 -51.93 -0.34 1.01 16 32 H 0.11 1.08 8.02 -51.93 -0.42 0.67 16 33 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -33.63 304.64 -6.12 -39.75 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.02 Total: -0.59 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.36 Total: -2.22 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.15 Total: -44.65 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.72 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.43 Total: -2.05 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.63 -6.12 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293712469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.359 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds