Wall clock time and date at job start Tue Mar 31 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38605 * 120.39830 * 2 1 4 4 C 1.38607 * 118.56006 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.40075 * 180.02562 * 4 3 2 6 6 N 1.32280 * 119.19211 * 359.97438 * 4 3 2 7 7 C 1.32493 * 120.74234 * 0.02562 * 6 4 3 8 8 N 1.38403 * 119.21328 * 180.02562 * 7 6 4 9 9 N 1.40104 * 119.99722 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99768 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00247 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99846 * 179.97438 * 10 9 8 13 13 S 1.81001 * 109.47089 * 179.97438 * 12 10 9 14 14 C 1.76197 * 99.99823 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.38798 * 119.99992 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99954 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47323 * 119.99881 * 18 16 14 21 21 H 1.48501 * 109.47079 * 239.99496 * 18 16 14 22 22 N 1.32272 * 120.40406 * 179.72227 * 2 1 3 23 23 H 1.08999 * 109.47015 * 90.00477 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99630 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00347 * 1 2 3 26 26 H 1.08007 * 120.72046 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.46996 * 90.00407 * 5 4 3 28 28 H 1.09007 * 109.47203 * 209.99928 * 5 4 3 29 29 H 1.08998 * 109.47568 * 329.99892 * 5 4 3 30 30 H 0.96995 * 120.00584 * 0.02562 * 8 7 6 31 31 H 0.96995 * 120.00279 * 359.97438 * 9 8 7 32 32 H 1.08994 * 109.47458 * 299.99977 * 12 10 9 33 33 H 1.09005 * 109.47043 * 59.99591 * 12 10 9 34 34 H 0.97006 * 119.99817 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1955 0.0000 4 6 3.5938 1.1510 -0.0005 5 6 4.3977 2.4257 0.0000 6 7 4.2016 -0.0239 -0.0005 7 6 3.5014 -1.1486 -0.0005 8 7 4.1699 -2.3605 0.0000 9 7 3.4458 -3.5599 -0.0005 10 6 4.0968 -4.7400 0.0006 11 8 5.3093 -4.7637 0.0015 12 6 3.3179 -6.0302 0.0006 13 16 4.4670 -7.4286 0.0014 14 6 3.3206 -8.7666 0.0005 15 1 2.2589 -8.5681 0.0002 16 6 3.7818 -10.0757 0.0014 17 7 5.0756 -10.3177 0.0023 18 14 2.5663 -11.4943 -0.0003 19 1 1.1811 -10.9592 -0.0018 20 1 2.7776 -12.3258 -1.2124 21 1 2.7741 -12.3256 1.2126 22 7 2.1765 -1.1408 0.0055 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6867 2.1412 -0.0004 27 1 4.5919 2.7322 1.0279 28 1 5.3441 2.2586 -0.5143 29 1 3.8386 3.2081 -0.5131 30 1 5.1396 -2.3795 0.0008 31 1 2.4760 -3.5410 -0.0008 32 1 2.6896 -6.0753 0.8901 33 1 2.6908 -6.0761 -0.8898 34 1 5.3979 -11.2326 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298408754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:22 Heat of formation + Delta-G solvation = 47.121393 kcal Electronic energy + Delta-G solvation = -18471.495164 eV Core-core repulsion = 15339.250725 eV Total energy + Delta-G solvation = -3132.244440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25482 -39.37716 -36.26293 -34.97802 -33.25536 -32.46657 -30.88249 -29.64663 -28.34531 -27.57175 -25.51911 -23.21662 -22.27362 -20.78250 -18.54984 -18.13733 -17.41639 -16.73599 -15.81805 -15.73247 -15.56690 -15.05998 -14.83497 -14.24075 -13.98438 -13.75992 -13.41153 -13.40048 -13.35548 -12.84336 -12.65440 -12.40173 -12.35435 -11.45865 -11.19511 -11.08956 -11.06229 -10.80212 -10.51133 -9.87276 -9.75490 -9.64581 -9.34501 -9.10777 -8.30575 -7.77665 -6.55727 -6.25560 -3.97042 0.93496 0.97132 1.66457 2.87505 3.13455 3.20251 3.28292 3.35807 3.59514 3.63648 3.97573 4.15922 4.21576 4.65633 4.89715 4.95449 5.03584 5.10138 5.12646 5.19807 5.24735 5.31059 5.49122 5.56174 5.60280 5.69660 5.77096 6.04150 6.15328 6.59312 6.96676 7.12332 7.56823 7.60584 8.06213 8.31909 8.53211 9.20065 10.81902 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.002927 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.984083 B = 9563.668477 C =10300.903668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.226 3.774 3 C -0.298 4.298 4 C 0.226 3.774 5 C -0.106 4.106 6 N -0.572 5.572 7 C 0.578 3.422 8 N -0.488 5.488 9 N -0.518 5.518 10 C 0.533 3.467 11 O -0.516 6.516 12 C -0.142 4.142 13 S -0.051 6.051 14 C -0.536 4.536 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.581 5.581 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.447 0.553 31 H 0.431 0.569 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 24.607 -0.023 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 C -0.324 4.324 4 C 0.079 3.921 5 C -0.163 4.163 6 N -0.298 5.298 7 C 0.221 3.779 8 N -0.218 5.218 9 N -0.269 5.269 10 C 0.319 3.681 11 O -0.388 6.388 12 C -0.294 4.294 13 S 0.175 5.825 14 C -0.685 4.685 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.747 3.253 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.307 5.307 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.160 0.840 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.293 0.707 31 H 0.273 0.727 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.460 23.337 -0.014 24.215 hybrid contribution -2.603 -0.122 -0.003 2.606 sum -9.063 23.215 -0.017 24.921 Atomic orbital electron populations 1.20798 0.87839 1.04064 1.03716 1.21374 0.96968 0.87210 0.86647 1.22143 0.95308 1.00114 1.14840 1.21368 0.91410 0.92543 0.86828 1.20791 1.00249 0.91584 1.03708 1.67524 1.40817 0.97223 1.24238 1.18817 0.85234 0.85075 0.88822 1.42535 1.06943 0.93623 1.78741 1.45080 1.08398 0.95258 1.78200 1.20708 0.88818 0.82832 0.75731 1.90736 1.13573 1.86354 1.48150 1.23464 1.04509 0.95706 1.05745 1.85473 1.07750 0.92532 1.96767 1.22908 0.94336 0.92134 1.59092 0.90654 1.25003 0.95815 0.98332 0.94441 1.70023 1.12496 1.20951 1.46771 0.86087 0.80401 0.80913 0.77917 1.19552 1.20542 1.20548 1.67570 1.07190 1.31457 1.24474 0.89581 0.89872 0.90044 0.83969 0.89593 0.89893 0.90006 0.70745 0.72720 0.88468 0.88467 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 36.01 0.37 -0.31 16 2 C 0.23 2.27 6.82 -82.26 -0.56 1.71 16 3 C -0.30 -2.61 9.53 -39.31 -0.37 -2.99 16 4 C 0.23 2.29 6.82 -82.27 -0.56 1.73 16 5 C -0.11 -0.66 10.22 36.00 0.37 -0.29 16 6 N -0.57 -7.55 10.40 -10.16 -0.11 -7.65 16 7 C 0.58 8.21 8.54 -322.81 -2.76 5.45 16 8 N -0.49 -7.35 6.42 29.76 0.19 -7.16 16 9 N -0.52 -7.93 6.28 31.22 0.20 -7.73 16 10 C 0.53 10.02 7.96 -10.98 -0.09 9.94 16 11 O -0.52 -11.55 15.70 5.56 0.09 -11.46 16 12 C -0.14 -2.80 6.16 36.01 0.22 -2.58 16 13 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 16 14 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 15 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 18 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 N -0.58 -7.51 9.32 -10.15 -0.09 -7.61 16 23 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.45 6.87 8.11 -182.60 -1.48 5.39 16 31 H 0.43 5.72 7.91 -182.60 -1.44 4.28 16 32 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -34.65 319.27 -10.87 -45.52 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.27 Total: 3.95 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.18 Total: -0.08 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.92 Total: -55.32 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.65 -10.87 -45.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298408754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.639 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds