Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46897 * 111.00012 * 59.99745 * 3 2 1 5 5 C 1.50701 * 109.47093 * 180.02562 * 4 3 2 6 6 H 1.07993 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00106 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99806 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47177 * 60.00240 * 9 7 5 11 11 H 1.48507 * 109.47283 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47274 * 300.00225 * 9 7 5 13 13 C 1.50708 * 109.47141 * 119.99505 * 2 1 3 14 14 N 1.34779 * 120.00011 * 205.00222 * 13 2 1 15 15 O 1.21279 * 119.99804 * 25.00016 * 13 2 1 16 16 C 1.50697 * 109.47466 * 239.99608 * 2 1 3 17 17 C 1.38267 * 119.99166 * 119.72316 * 16 2 1 18 18 C 1.38224 * 120.02347 * 179.77175 * 17 16 2 19 19 C 1.38236 * 120.01096 * 0.50521 * 18 17 16 20 20 C 1.38329 * 119.98952 * 359.75207 * 19 18 17 21 21 Cl 1.73599 * 120.01546 * 180.02562 * 20 19 18 22 22 C 1.38193 * 119.99464 * 300.00228 * 16 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 26 26 H 1.00907 * 110.99562 * 296.04680 * 3 2 1 27 27 H 1.09001 * 109.46981 * 300.00147 * 4 3 2 28 28 H 1.09000 * 109.47220 * 60.00078 * 4 3 2 29 29 H 0.97003 * 119.99975 * 179.97438 * 8 7 5 30 30 H 0.96995 * 119.99934 * 359.97438 * 14 13 2 31 31 H 0.97001 * 119.99636 * 180.02562 * 14 13 2 32 32 H 1.07993 * 119.98961 * 0.02562 * 17 16 2 33 33 H 1.07998 * 119.99125 * 180.25368 * 18 17 16 34 34 H 1.08001 * 120.00725 * 179.72398 * 19 18 17 35 35 H 1.08005 * 120.00202 * 359.97438 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 1.1876 5 6 2.0693 3.5237 1.1525 6 1 2.6878 3.8511 0.3300 7 6 1.7551 4.3996 2.1699 8 7 1.0015 4.0011 3.1713 9 14 2.4011 6.1518 2.1267 10 1 1.9065 6.8316 0.9026 11 1 1.9248 6.8847 3.3273 12 1 3.8858 6.1319 2.1162 13 6 2.0323 -0.7103 1.2306 14 7 3.2543 -0.4244 1.7221 15 8 1.3370 -1.5392 1.7786 16 6 2.0324 -0.7105 -1.2304 17 6 2.8226 -0.0367 -2.1433 18 6 3.2877 -0.6891 -3.2697 19 6 2.9543 -2.0126 -3.4892 20 6 2.1594 -2.6856 -2.5789 21 17 1.7409 -4.3478 -2.8537 22 6 1.6985 -2.0335 -1.4489 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.7502 1.8638 -0.8464 27 1 0.4588 2.1246 1.1958 28 1 1.9121 1.6108 2.0859 29 1 0.7807 4.6172 3.8873 30 1 3.8105 0.2382 1.2836 31 1 3.5777 -0.8819 2.5139 32 1 3.0799 0.9984 -1.9742 33 1 3.9082 -0.1635 -3.9803 34 1 3.3141 -2.5209 -4.3716 35 1 1.0778 -2.5584 -0.7377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298411743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = -21.364966 kcal Electronic energy + Delta-G solvation = -20030.766163 eV Core-core repulsion = 16861.215474 eV Total energy + Delta-G solvation = -3169.550688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34294 -38.57512 -36.59524 -35.77881 -33.04211 -32.97742 -31.29590 -30.52653 -28.76466 -26.34991 -24.31789 -22.89420 -22.00831 -21.63205 -19.09911 -17.63416 -16.70584 -16.50056 -16.17708 -15.42454 -14.98243 -14.85351 -14.37471 -14.07486 -13.74881 -13.46309 -13.35224 -13.22460 -12.79561 -12.31613 -11.77256 -11.71738 -11.52865 -11.48944 -11.27698 -11.13910 -10.93346 -10.72403 -10.68106 -10.03684 -9.62081 -9.36703 -9.09121 -8.87737 -8.65053 -8.56963 -7.66983 -6.12792 -4.16608 1.16636 1.24831 2.09454 3.06915 3.26422 3.31950 3.33180 3.59824 4.06968 4.31262 4.58657 4.84769 4.92803 5.09484 5.23210 5.34320 5.35808 5.45478 5.53258 5.73139 5.83118 6.06784 6.11613 6.19917 6.38997 6.51068 6.57679 6.80233 7.00949 7.23026 7.28106 7.57865 7.86110 7.96815 8.06305 8.34438 8.75785 8.90966 9.48643 10.97680 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.004423 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.500231 B = 6328.793253 C = 6862.982679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.675 5.675 4 C 0.184 3.816 5 C -0.519 4.519 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.548 3.452 14 N -0.836 5.836 15 O -0.557 6.557 16 C -0.055 4.055 17 C -0.091 4.091 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.036 4.036 21 Cl -0.079 7.079 22 C -0.101 4.101 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.341 0.659 27 H -0.002 1.002 28 H 0.036 0.964 29 H 0.263 0.737 30 H 0.413 0.587 31 H 0.394 0.606 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 -10.390 -11.894 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 N -0.308 5.308 4 C 0.058 3.942 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.332 3.668 14 N -0.398 5.398 15 O -0.435 6.435 16 C -0.056 4.056 17 C -0.109 4.109 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.063 4.063 21 Cl -0.050 7.050 22 C -0.120 4.120 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.160 0.840 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.224 0.776 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.321 -11.116 -11.227 16.379 hybrid contribution -0.286 1.138 0.024 1.174 sum 4.035 -9.977 -11.203 15.535 Atomic orbital electron populations 1.22333 0.93897 1.02956 1.03117 1.19871 0.94297 0.92066 0.90124 1.61052 1.62380 0.99131 1.08282 1.19784 0.94245 0.93112 0.87078 1.21035 1.31981 0.95088 1.07689 0.91865 1.24975 0.95094 0.98923 0.95357 1.69955 1.36727 1.35924 1.10530 0.86541 0.79236 0.84106 0.77372 1.20250 1.21373 1.20165 1.20011 0.81268 0.81159 0.84386 1.43736 1.18589 1.45010 1.32416 1.90683 1.56779 1.35152 1.60874 1.19562 0.97549 0.92969 0.95506 1.21345 0.95385 1.01542 0.92670 1.21136 1.00098 0.93783 0.97930 1.21031 0.98389 0.95056 0.98964 1.20801 1.01975 0.85950 0.97568 1.98356 1.92619 1.17799 1.96219 1.20998 1.00103 0.94486 0.96428 0.91684 0.92038 0.90605 0.84025 0.98426 0.94560 0.92709 0.75602 0.77643 0.83500 0.85033 0.85319 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 7.58 37.16 0.28 -2.56 16 2 C 0.13 2.23 0.73 -133.90 -0.10 2.13 16 3 N -0.68 -12.20 4.35 -103.58 -0.45 -12.65 16 4 C 0.18 4.32 4.69 -4.98 -0.02 4.30 16 5 C -0.52 -13.37 9.32 -34.44 -0.32 -13.69 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.55 10.20 5.37 -10.98 -0.06 10.15 16 14 N -0.84 -13.42 8.02 31.22 0.25 -13.17 16 15 O -0.56 -11.85 16.93 5.56 0.09 -11.76 16 16 C -0.05 -0.79 4.76 -104.63 -0.50 -1.29 16 17 C -0.09 -1.15 9.14 -39.58 -0.36 -1.51 16 18 C -0.11 -1.19 10.05 -39.59 -0.40 -1.59 16 19 C -0.12 -1.27 9.83 -39.55 -0.39 -1.66 16 20 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.44 16 22 C -0.10 -1.45 8.60 -39.55 -0.34 -1.79 16 23 H 0.06 1.08 7.12 -51.93 -0.37 0.71 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.51 6.40 -51.93 -0.33 1.17 16 26 H 0.34 5.82 7.53 -39.29 -0.30 5.52 16 27 H 0.00 -0.05 6.30 -51.93 -0.33 -0.38 16 28 H 0.04 0.93 6.57 -51.93 -0.34 0.59 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.41 6.34 8.19 -40.82 -0.33 6.00 16 31 H 0.39 5.61 8.93 -40.82 -0.36 5.25 16 32 H 0.15 1.81 6.40 -52.49 -0.34 1.47 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 2.07 7.58 -52.48 -0.40 1.67 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -29.61 309.64 -7.69 -37.30 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -3.91 Total: 14.08 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.55 Total: -6.73 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.54 Total: -50.64 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.61 -7.69 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298411743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.933 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds