Wall clock time and date at job start Tue Mar 31 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46942 * 2 1 4 4 H 1.08999 * 109.47717 * 305.00034 * 3 2 1 5 5 C 1.50704 * 109.47128 * 185.00024 * 3 2 1 6 6 H 1.08001 * 120.00241 * 240.00145 * 5 3 2 7 7 C 1.37878 * 119.99807 * 60.00094 * 5 3 2 8 8 N 1.31519 * 120.00236 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00032 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47291 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99960 * 9 7 5 12 12 H 1.48500 * 109.47230 * 239.99637 * 9 7 5 13 13 N 1.46502 * 109.47365 * 65.00245 * 3 2 1 14 14 C 1.34770 * 120.00090 * 275.00127 * 13 3 2 15 15 O 1.21287 * 119.99915 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00260 * 180.02562 * 14 13 3 17 17 C 1.50704 * 109.47291 * 179.97438 * 16 14 13 18 18 C 1.38162 * 120.42660 * 264.99374 * 17 16 14 19 19 N 1.31884 * 120.77579 * 179.74427 * 18 17 16 20 20 C 1.31899 * 121.75728 * 0.25816 * 19 18 17 21 21 C 1.38129 * 120.78306 * 0.02562 * 20 19 18 22 22 C 1.38778 * 120.42731 * 85.27100 * 17 16 14 23 23 Cl 1.73597 * 120.80461 * 0.02562 * 22 17 16 24 24 H 1.08998 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46971 * 299.99932 * 1 2 3 26 26 H 1.08995 * 109.46772 * 59.99616 * 1 2 3 27 27 H 1.09003 * 109.46971 * 240.00067 * 2 1 3 28 28 H 1.08993 * 109.47242 * 120.00150 * 2 1 3 29 29 H 0.96999 * 120.00241 * 179.97438 * 8 7 5 30 30 H 0.96994 * 119.99851 * 94.99369 * 13 3 2 31 31 H 1.08999 * 109.47396 * 59.99464 * 16 14 13 32 32 H 1.09006 * 109.47151 * 299.99260 * 16 14 13 33 33 H 1.08002 * 119.61498 * 0.03062 * 18 17 16 34 34 H 1.08001 * 119.61078 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.42713 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4962 -0.5189 -1.4628 12 1 6.4000 1.6157 -2.6093 13 7 1.6525 2.0975 1.2518 14 6 0.4353 2.6644 1.3671 15 8 -0.3392 2.6326 0.4342 16 6 0.0368 3.3386 2.6545 17 6 -1.3607 3.8870 2.5228 18 6 -1.5642 5.2039 2.1579 19 7 -2.7842 5.6895 2.0358 20 6 -3.8521 4.9483 2.2593 21 6 -3.7280 3.6244 2.6333 22 6 -2.4598 3.0772 2.7722 23 17 -2.2539 1.4184 3.2409 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8293 -0.0612 -2.9499 30 1 2.2720 2.1231 1.9977 31 1 0.7282 4.1541 2.8667 32 1 0.0681 2.6145 3.4687 33 1 -0.7142 5.8419 1.9659 34 1 -4.8352 5.3818 2.1494 35 1 -4.6063 3.0228 2.8153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298816615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:53 Heat of formation + Delta-G solvation = -19.725790 kcal Electronic energy + Delta-G solvation = -19877.088932 eV Core-core repulsion = 16707.609324 eV Total energy + Delta-G solvation = -3169.479608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43647 -38.84156 -36.72954 -35.15528 -33.31822 -32.36925 -31.89296 -30.90817 -28.16212 -26.61764 -23.68819 -23.27178 -22.45240 -20.24809 -19.32186 -17.50623 -17.09804 -16.89440 -15.90106 -15.46237 -15.00650 -14.63117 -14.30233 -14.02629 -13.87513 -13.49032 -12.95639 -12.73191 -12.57868 -12.23130 -12.15644 -11.63986 -11.31135 -11.26248 -10.99873 -10.92497 -10.83793 -10.31266 -10.17381 -9.66965 -9.62130 -9.44794 -9.32166 -9.03626 -8.84543 -8.50496 -7.82586 -6.13154 -4.22680 0.95259 0.99605 1.94522 3.22652 3.30698 3.32886 3.37934 3.57642 4.14145 4.30164 4.40776 4.57450 4.65589 4.84584 5.17709 5.18231 5.31683 5.50446 5.54537 5.67596 5.73126 5.97399 6.40488 6.45599 6.48365 6.68059 7.05861 7.20743 7.37582 7.45513 7.61772 7.72838 7.81835 7.89844 8.18063 8.65647 8.77111 9.12647 9.44944 10.92116 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.004451 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.478167 B = 6289.071719 C = 6711.697037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.540 6.540 16 C -0.111 4.111 17 C -0.096 4.096 18 C 0.124 3.876 19 N -0.481 5.481 20 C 0.104 3.896 21 C -0.166 4.166 22 C 0.020 3.980 23 Cl -0.048 7.048 24 H 0.020 0.980 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 5.355 12.279 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.418 6.418 16 C -0.152 4.152 17 C -0.099 4.099 18 C -0.033 4.033 19 N -0.189 5.189 20 C -0.053 4.053 21 C -0.186 4.186 22 C -0.014 4.014 23 Cl -0.018 7.018 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.831 5.941 11.190 16.668 hybrid contribution 1.414 -1.214 0.484 1.926 sum -9.417 4.727 11.674 15.726 Atomic orbital electron populations 1.21849 0.98296 0.97956 1.01418 1.21926 0.92643 0.99817 1.02179 1.18778 0.94148 0.89155 0.80951 0.93355 1.21274 0.90739 1.38948 1.06264 0.92034 1.24887 0.98568 0.94813 0.95406 1.69908 1.35032 1.37643 1.09342 0.86415 0.84924 0.77769 0.78116 1.19739 1.20895 1.20897 1.46465 1.14473 1.56009 1.18596 1.19993 0.82981 0.79628 0.88439 1.90702 1.51263 1.59602 1.40280 1.20765 0.93093 1.02101 0.99199 1.20303 0.94716 0.94753 1.00101 1.22669 0.95002 0.92061 0.93592 1.67663 0.98969 1.38706 1.13611 1.22717 0.97945 0.89931 0.94676 1.22043 0.96491 0.97368 1.02734 1.21174 0.94557 0.86596 0.99121 1.98399 1.97579 1.16118 1.89742 0.96079 0.93843 0.93314 0.88388 0.95124 0.92628 0.77975 0.87695 0.87964 0.81994 0.82070 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.68 2.24 -69.08 -0.15 6.53 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -13.99 5.02 -54.93 -0.28 -14.26 16 14 C 0.51 9.40 6.39 -10.99 -0.07 9.33 16 15 O -0.54 -12.10 13.17 5.55 0.07 -12.03 16 16 C -0.11 -1.48 5.41 -29.04 -0.16 -1.64 16 17 C -0.10 -1.32 4.39 -104.45 -0.46 -1.78 16 18 C 0.12 1.65 10.84 -17.56 -0.19 1.46 16 19 N -0.48 -6.48 10.36 -13.27 -0.14 -6.61 16 20 C 0.10 1.18 11.18 -17.56 -0.20 0.98 16 21 C -0.17 -1.90 9.94 -39.41 -0.39 -2.29 16 22 C 0.02 0.28 6.37 -39.17 -0.25 0.03 16 23 Cl -0.05 -0.64 27.60 -51.86 -1.43 -2.07 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.93 5.65 -51.93 -0.29 0.64 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.58 8.54 -40.82 -0.35 6.23 16 31 H 0.10 1.10 8.06 -51.93 -0.42 0.68 16 32 H 0.10 1.22 7.22 -51.93 -0.38 0.85 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -30.99 310.40 -7.78 -38.77 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.20 Total: 5.94 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.09 Total: -5.85 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.21 Total: -44.82 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.99 -7.78 -38.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298816615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.046 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds