Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47316 * 2 1 4 4 C 1.50704 * 109.47096 * 239.99886 * 2 1 3 5 5 H 1.07998 * 120.00058 * 241.34903 * 4 2 1 6 6 C 1.37875 * 119.99583 * 61.34758 * 4 2 1 7 7 N 1.31518 * 119.99811 * 193.97187 * 6 4 2 8 8 Si 1.86803 * 120.00338 * 13.97983 * 6 4 2 9 9 H 1.48499 * 109.47170 * 84.54476 * 8 6 4 10 10 H 1.48497 * 109.46902 * 204.54645 * 8 6 4 11 11 H 1.48503 * 109.46567 * 324.54331 * 8 6 4 12 12 C 1.53008 * 109.46987 * 120.00543 * 2 1 3 13 13 N 1.46505 * 109.46489 * 299.99678 * 12 2 1 14 14 C 1.34776 * 119.99414 * 180.02562 * 13 12 2 15 15 O 1.21528 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.48110 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.39351 * 119.70812 * 179.97438 * 16 14 13 18 18 C 1.38520 * 119.07874 * 179.97438 * 17 16 14 19 19 C 1.38767 * 118.47661 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.33810 * 179.97438 * 19 18 17 21 21 C 1.38720 * 119.32772 * 0.02562 * 19 18 17 22 22 N 1.31486 * 120.88006 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.47174 * 309.36635 * 1 2 3 24 24 H 1.08999 * 109.46862 * 69.36712 * 1 2 3 25 25 H 1.09005 * 109.47274 * 189.36843 * 1 2 3 26 26 H 1.09003 * 109.47337 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47060 * 300.00282 * 3 2 1 28 28 H 1.09007 * 109.46988 * 60.00111 * 3 2 1 29 29 H 0.96998 * 119.99885 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46797 * 180.02562 * 12 2 1 31 31 H 1.08991 * 109.47333 * 59.99538 * 12 2 1 32 32 H 0.96996 * 120.00595 * 359.97438 * 13 12 2 33 33 H 1.08002 * 120.45786 * 0.24426 * 17 16 14 34 34 H 1.08001 * 120.76379 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.56425 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7083 10 1 0.2470 1.5865 -3.9287 11 1 0.1418 1.8042 -1.5158 12 6 2.0400 -0.7214 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4910 3.6695 15 8 2.5762 -1.4791 3.7810 16 6 1.3835 0.2069 4.8788 17 6 1.7238 -0.2746 6.1415 18 6 1.2549 0.3885 7.2636 19 6 0.4609 1.5124 7.0845 20 17 -0.1533 2.3800 8.4571 21 6 0.1621 1.9351 5.7975 22 7 0.6203 1.2853 4.7503 23 1 -0.3633 0.6518 0.7945 24 1 -0.3633 0.3621 -0.9618 25 1 -0.3634 -1.0140 0.1673 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6980 -0.6297 -4.4268 30 1 3.1300 -0.7210 1.2494 31 1 1.6766 -1.7490 1.2492 32 1 0.9943 0.7582 2.3565 33 1 2.3480 -1.1499 6.2437 34 1 1.5023 0.0393 8.2553 35 1 -0.4551 2.8097 5.6537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315477464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = 4.687072 kcal Electronic energy + Delta-G solvation = -19472.695081 eV Core-core repulsion = 16304.274094 eV Total energy + Delta-G solvation = -3168.420987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83528 -39.01165 -37.09200 -36.72318 -33.61551 -32.75230 -31.72967 -31.23281 -26.53905 -26.32177 -25.08053 -24.30006 -23.77794 -20.72614 -19.29268 -18.16627 -17.26211 -16.73727 -16.10586 -15.49058 -15.35725 -15.01565 -14.87719 -14.31807 -13.99249 -13.54063 -13.23029 -12.93265 -12.83006 -12.56547 -12.33488 -12.20322 -12.02223 -11.73346 -11.32460 -10.45923 -10.42166 -10.31048 -10.24999 -10.16466 -10.06061 -9.71786 -9.36580 -9.12403 -8.68344 -8.59848 -8.45355 -6.14965 -4.12457 0.18515 0.74258 1.53069 2.63511 3.25361 3.30331 3.32923 3.39635 3.61559 3.93127 4.24606 4.36112 4.43971 4.59213 4.85300 5.16061 5.29250 5.42056 5.52838 5.75795 6.00677 6.03385 6.07209 6.38218 6.45551 6.53046 6.61332 6.69519 6.71632 6.94246 7.20386 7.27266 7.42231 7.71293 7.85711 8.37883 8.46681 8.89938 9.49005 10.98041 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033327 B = 0.003646 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.955453 B = 7678.139481 C = 8311.929669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.138 3.862 13 N -0.696 5.696 14 C 0.559 3.441 15 O -0.537 6.537 16 C 0.092 3.908 17 C -0.102 4.102 18 C -0.072 4.072 19 C -0.077 4.077 20 Cl -0.051 7.051 21 C 0.115 3.885 22 N -0.443 5.443 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.408 0.592 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 7.047 22.191 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.016 3.984 13 N -0.346 5.346 14 C 0.342 3.658 15 O -0.415 6.415 16 C -0.046 4.046 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.106 4.106 20 Cl -0.022 7.022 21 C -0.046 4.046 22 N -0.154 5.154 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.245 0.755 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.087 6.642 21.266 22.650 hybrid contribution -0.457 1.200 0.692 1.459 sum -4.544 7.842 21.958 23.755 Atomic orbital electron populations 1.22303 0.97733 0.99912 1.00117 1.18725 0.92633 0.92316 0.93580 1.22368 1.01174 0.98275 0.98764 1.20708 1.34149 1.12348 0.87963 0.90485 1.24964 0.94625 0.97311 0.95765 1.69951 1.48165 1.35923 0.98731 0.87304 0.79411 0.85535 0.76049 1.21323 1.23389 1.17404 1.21655 0.98849 0.95985 0.81884 1.46228 1.51298 1.31589 1.05481 1.17767 0.81139 0.84025 0.82906 1.90792 1.38423 1.25832 1.86422 1.21594 0.95579 0.92858 0.94588 1.22187 0.98595 1.00636 0.90849 1.21573 0.94790 0.92938 1.00530 1.22351 1.01063 0.96757 0.90435 1.98397 1.86051 1.75516 1.42252 1.22848 0.97192 0.98975 0.85586 1.67768 1.08144 1.06267 1.33209 0.95713 0.92467 0.93407 0.92783 0.93977 0.94963 0.92541 0.91544 0.91431 0.75503 0.82310 0.83020 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.53 37.16 0.28 -2.67 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -3.05 7.52 37.15 0.28 -2.78 16 4 C -0.51 -13.75 8.62 -34.44 -0.30 -14.05 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.11 22.79 -169.99 -3.87 17.24 16 9 H -0.29 -6.79 7.10 56.52 0.40 -6.39 16 10 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.41 4.65 56.52 0.26 -5.15 16 12 C 0.14 2.76 4.49 -4.03 -0.02 2.75 16 13 N -0.70 -11.92 4.99 -61.16 -0.31 -12.23 16 14 C 0.56 9.31 7.81 -12.21 -0.10 9.22 16 15 O -0.54 -10.33 16.32 5.34 0.09 -10.24 16 16 C 0.09 1.24 6.75 -83.01 -0.56 0.68 16 17 C -0.10 -1.09 9.63 -39.06 -0.38 -1.47 16 18 C -0.07 -0.60 9.97 -39.28 -0.39 -0.99 16 19 C -0.08 -0.67 6.35 -39.21 -0.25 -0.92 16 20 Cl -0.05 -0.38 28.99 -51.86 -1.50 -1.88 16 21 C 0.11 1.11 10.98 -17.52 -0.19 0.92 16 22 N -0.44 -5.51 9.54 -9.77 -0.09 -5.61 16 23 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 24 H 0.06 1.25 4.30 -51.93 -0.22 1.03 16 25 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 28 H 0.03 0.56 6.86 -51.93 -0.36 0.21 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.41 6.53 5.58 -40.82 -0.23 6.31 16 33 H 0.16 1.58 7.64 -52.49 -0.40 1.18 16 34 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -30.33 299.65 -6.12 -36.45 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.92 Total: 4.32 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.79 Total: -6.75 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.38 Total: -43.65 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -3.87 Total: 17.24 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.33 -6.12 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315477464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.136 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds