Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21508 * 120.00020 * 359.73233 * 14 13 12 16 16 C 1.48173 * 119.99767 * 179.72234 * 14 13 12 17 17 C 1.39274 * 119.70954 * 179.73356 * 16 14 13 18 18 C 1.38633 * 119.08596 * 179.73619 * 17 16 14 19 19 C 1.38559 * 118.50096 * 0.52474 * 18 17 16 20 20 C 1.38725 * 119.34942 * 359.73799 * 19 18 17 21 21 Cl 1.73594 * 119.56942 * 179.97438 * 20 19 18 22 22 N 1.31621 * 120.86645 * 359.97438 * 20 19 18 23 23 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 24 24 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 25 25 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 26 26 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 28 28 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 29 29 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 31 31 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 32 32 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 33 33 H 1.07998 * 120.45945 * 359.97438 * 17 16 14 34 34 H 1.08000 * 120.74620 * 180.24340 * 18 17 16 35 35 H 1.08007 * 120.32227 * 179.75255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5806 -1.4758 3.7809 16 6 1.3931 0.2142 4.8792 17 6 1.7333 -0.2668 6.1412 18 6 1.2734 0.4033 7.2643 19 6 0.4799 1.5251 7.0862 20 6 0.1755 1.9453 5.7997 21 17 -0.8188 3.3496 5.5699 22 7 0.6305 1.2931 4.7509 23 1 -0.3634 0.6518 0.7945 24 1 -0.3633 0.3621 -0.9617 25 1 -0.3633 -1.0140 0.1672 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6979 -0.6297 -4.4269 30 1 3.1301 -0.7208 1.2494 31 1 1.6768 -1.7489 1.2492 32 1 0.9943 0.7582 2.3564 33 1 2.3501 -1.1474 6.2435 34 1 1.5243 0.0561 8.2558 35 1 0.1023 2.0672 7.9407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315806954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = 5.788042 kcal Electronic energy + Delta-G solvation = -19624.663601 eV Core-core repulsion = 16456.290355 eV Total energy + Delta-G solvation = -3168.373246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82114 -39.00181 -36.97069 -36.68078 -33.67565 -32.82099 -31.62600 -31.26037 -26.58581 -26.31724 -25.09425 -24.24485 -23.66521 -20.74471 -19.28277 -18.16916 -17.30514 -16.34293 -16.08654 -15.57839 -15.42164 -15.23830 -14.87040 -14.38171 -14.00953 -13.52697 -13.19487 -12.89064 -12.62962 -12.43055 -12.19337 -12.00885 -11.97013 -11.62527 -11.30998 -10.49515 -10.44417 -10.40216 -10.27938 -10.14747 -10.04257 -9.69108 -9.35925 -9.10804 -8.66635 -8.59070 -8.43935 -6.13627 -4.11025 0.27526 0.70161 1.44963 2.64876 3.26954 3.30281 3.34947 3.40997 3.60593 4.01058 4.37648 4.40623 4.54098 4.63141 4.93500 5.07209 5.17514 5.48700 5.64716 5.77475 6.00896 6.04708 6.09184 6.40271 6.47019 6.54999 6.62951 6.71196 6.72852 6.95599 7.17265 7.22078 7.43685 7.72642 7.86020 8.38417 8.47736 8.91071 9.50501 10.99329 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004530 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.794876 B = 6179.742006 C = 7180.845869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.138 3.862 13 N -0.696 5.696 14 C 0.559 3.441 15 O -0.536 6.536 16 C 0.109 3.891 17 C -0.112 4.112 18 C -0.068 4.068 19 C -0.139 4.139 20 C 0.173 3.827 21 Cl -0.026 7.026 22 N -0.454 5.454 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.408 0.592 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 6.995 22.427 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.016 3.984 13 N -0.346 5.346 14 C 0.342 3.658 15 O -0.414 6.414 16 C -0.030 4.030 17 C -0.133 4.133 18 C -0.094 4.094 19 C -0.160 4.160 20 C 0.007 3.993 21 Cl 0.002 6.998 22 N -0.168 5.168 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.245 0.755 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.056 6.647 21.364 22.738 hybrid contribution -0.526 1.308 0.432 1.474 sum -4.581 7.955 21.796 23.650 Atomic orbital electron populations 1.22302 0.97727 0.99910 1.00138 1.18730 0.92646 0.92323 0.93590 1.22370 1.01155 0.98279 0.98787 1.20697 1.34117 1.12320 0.87942 0.90490 1.24952 0.94613 0.97278 0.95764 1.69948 1.48198 1.35911 0.98719 0.87317 0.79432 0.85571 0.76055 1.21329 1.23386 1.17405 1.21658 0.98847 0.95989 0.81880 1.46245 1.51161 1.31666 1.05499 1.17762 0.81121 0.84012 0.82867 1.90788 1.38419 1.25803 1.86350 1.21363 0.95108 0.91712 0.94822 1.22282 0.98710 1.00823 0.91493 1.21647 0.94456 0.93375 0.99882 1.22045 0.99334 0.98006 0.96655 1.21643 0.95997 0.91930 0.89773 1.98426 1.66665 1.36984 1.97716 1.66901 1.08957 1.06729 1.34166 0.95708 0.92462 0.93404 0.92783 0.93977 0.94960 0.92556 0.91520 0.91403 0.75471 0.82475 0.82956 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.53 37.16 0.28 -2.74 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -3.13 7.52 37.16 0.28 -2.85 16 4 C -0.51 -13.83 8.62 -34.44 -0.30 -14.13 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.08 2.14 5.32 -17.82 -0.09 2.05 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 8 Si 0.88 21.37 22.79 -169.99 -3.87 17.50 16 9 H -0.29 -6.88 7.10 56.52 0.40 -6.48 16 10 H -0.31 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.25 -5.52 4.65 56.52 0.26 -5.26 16 12 C 0.14 2.80 4.49 -4.04 -0.02 2.79 16 13 N -0.70 -12.25 4.99 -61.15 -0.31 -12.56 16 14 C 0.56 9.50 7.81 -12.18 -0.10 9.40 16 15 O -0.54 -10.36 16.32 5.36 0.09 -10.27 16 16 C 0.11 1.50 6.75 -83.01 -0.56 0.94 16 17 C -0.11 -1.18 9.63 -39.05 -0.38 -1.56 16 18 C -0.07 -0.50 10.17 -39.32 -0.40 -0.90 16 19 C -0.14 -1.10 9.88 -39.28 -0.39 -1.49 16 20 C 0.17 1.91 7.27 -17.46 -0.13 1.79 16 21 Cl -0.03 -0.27 29.10 -51.86 -1.51 -1.78 16 22 N -0.45 -6.15 9.52 -6.94 -0.07 -6.22 16 23 H 0.02 0.45 7.13 -51.93 -0.37 0.08 16 24 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 25 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 26 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 27 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 28 H 0.03 0.58 6.86 -51.93 -0.36 0.23 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.86 5.59 -40.82 -0.23 6.63 16 33 H 0.16 1.53 7.64 -52.49 -0.40 1.13 16 34 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -30.99 299.77 -6.18 -37.16 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.92 Total: 3.75 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.88 Total: -6.15 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.40 Total: -44.73 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -3.87 Total: 17.50 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.99 -6.18 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315806954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.953 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds