Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21508 * 120.00020 * 359.73233 * 14 13 12 16 16 C 1.48173 * 119.99767 * 179.72234 * 14 13 12 17 17 C 1.39274 * 119.70954 * 179.73356 * 16 14 13 18 18 C 1.38633 * 119.08596 * 179.73619 * 17 16 14 19 19 C 1.38559 * 118.50096 * 0.52474 * 18 17 16 20 20 C 1.38725 * 119.34942 * 359.73799 * 19 18 17 21 21 Cl 1.73594 * 119.56942 * 179.97438 * 20 19 18 22 22 N 1.31621 * 120.86645 * 359.97438 * 20 19 18 23 23 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 24 24 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 25 25 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 26 26 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 28 28 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 29 29 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 31 31 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 32 32 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 33 33 H 1.07998 * 120.45945 * 359.97438 * 17 16 14 34 34 H 1.08000 * 120.74620 * 180.24340 * 18 17 16 35 35 H 1.08007 * 120.32227 * 179.75255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5806 -1.4758 3.7809 16 6 1.3931 0.2142 4.8792 17 6 1.7333 -0.2668 6.1412 18 6 1.2734 0.4033 7.2643 19 6 0.4799 1.5251 7.0862 20 6 0.1755 1.9453 5.7997 21 17 -0.8188 3.3496 5.5699 22 7 0.6305 1.2931 4.7509 23 1 -0.3634 0.6518 0.7945 24 1 -0.3633 0.3621 -0.9617 25 1 -0.3633 -1.0140 0.1672 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6979 -0.6297 -4.4269 30 1 3.1301 -0.7208 1.2494 31 1 1.6768 -1.7489 1.2492 32 1 0.9943 0.7582 2.3564 33 1 2.3501 -1.1474 6.2435 34 1 1.5243 0.0561 8.2558 35 1 0.1023 2.0672 7.9407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315806954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -16.454095 kcal Electronic energy + Delta-G solvation = -19625.628093 eV Core-core repulsion = 16456.290355 eV Total energy + Delta-G solvation = -3169.337737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77859 -40.26469 -38.44215 -37.65416 -35.16237 -33.94570 -33.27736 -32.27515 -28.12721 -27.94023 -27.04773 -25.38127 -24.49394 -21.99958 -20.99896 -19.42923 -18.24336 -18.01719 -17.24943 -16.98237 -16.65038 -16.44842 -16.31821 -15.53921 -15.22418 -14.91391 -14.62826 -14.49624 -14.24091 -14.03907 -13.78557 -13.17398 -13.03530 -12.72667 -12.41206 -12.38632 -12.20672 -11.98764 -11.80095 -11.60744 -11.11900 -11.09183 -10.74602 -10.62937 -10.42209 -10.25019 -9.99693 -8.31129 -6.32503 -0.55536 -0.02113 0.69075 1.35853 1.37371 1.49244 1.58371 2.06059 2.33611 2.63354 3.04104 3.06527 3.69302 3.79905 3.91658 4.02873 4.16787 4.28600 4.33697 4.37820 4.69827 4.78445 4.82574 4.87318 4.89936 4.97485 5.02294 5.11807 5.33036 5.34793 5.46912 5.67743 5.74695 6.23227 6.29453 6.57631 6.71379 7.07571 7.32440 8.85751 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004530 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.794876 B = 6179.742006 C = 7180.845869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.516 4.516 5 H 0.033 0.967 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.313 1.313 11 H -0.211 1.211 12 C 0.153 3.847 13 N -0.694 5.694 14 C 0.560 3.440 15 O -0.569 6.569 16 C 0.079 3.921 17 C -0.111 4.111 18 C -0.049 4.049 19 C -0.119 4.119 20 C 0.156 3.844 21 Cl -0.025 7.025 22 N -0.479 5.479 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.414 0.586 33 H 0.160 0.840 34 H 0.200 0.800 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 9.358 26.091 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.554 4.554 5 H 0.051 0.949 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.770 3.230 9 H -0.208 1.208 10 H -0.242 1.242 11 H -0.135 1.135 12 C 0.030 3.970 13 N -0.344 5.344 14 C 0.345 3.655 15 O -0.448 6.448 16 C -0.058 4.058 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.139 4.139 20 C -0.012 4.012 21 Cl 0.004 6.996 22 N -0.193 5.193 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.178 0.822 34 H 0.217 0.783 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.395 9.025 25.068 27.184 hybrid contribution -0.079 0.495 -0.563 0.754 sum -5.474 9.521 24.504 26.853 Atomic orbital electron populations 1.22214 0.96292 1.00565 1.00704 1.18664 0.93663 0.93042 0.92044 1.22295 1.01099 0.96982 0.99988 1.20972 1.32987 1.11172 0.90253 0.94853 1.25775 0.95304 1.01295 0.95256 1.70095 1.50602 1.38144 0.99383 0.86383 0.79443 0.80334 0.76835 1.20833 1.24196 1.13488 1.21206 0.97866 0.95240 0.82735 1.46030 1.51610 1.31781 1.05012 1.18284 0.80115 0.83560 0.83530 1.90758 1.39794 1.27296 1.86966 1.20832 0.97799 0.93080 0.94122 1.22464 0.98399 1.01019 0.91288 1.22149 0.92544 0.92095 1.00688 1.22528 0.97462 0.97476 0.96434 1.21992 0.96494 0.92155 0.90527 1.98427 1.66599 1.36806 1.97798 1.66682 1.09637 1.07088 1.35925 0.92450 0.93418 0.93812 0.93146 0.94547 0.91665 0.92600 0.92975 0.93155 0.74765 0.82211 0.78331 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 7.53 71.98 0.54 -5.15 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.17 16 3 C -0.15 -5.88 7.52 71.98 0.54 -5.34 16 4 C -0.52 -28.80 8.62 25.60 0.22 -28.58 16 5 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 6 C 0.02 1.23 5.32 84.65 0.45 1.68 16 7 N -0.94 -58.79 13.96 21.44 0.30 -58.49 16 8 Si 0.94 43.80 22.79 68.60 1.56 45.36 16 9 H -0.28 -12.83 7.10 99.48 0.71 -12.12 16 10 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 11 H -0.21 -8.55 4.65 99.48 0.46 -8.09 16 12 C 0.15 6.34 4.49 86.38 0.39 6.73 16 13 N -0.69 -24.12 4.99 -465.67 -2.33 -26.44 16 14 C 0.56 18.92 7.81 86.88 0.68 19.60 16 15 O -0.57 -22.37 16.32 -3.74 -0.06 -22.43 16 16 C 0.08 2.07 6.75 41.90 0.28 2.35 16 17 C -0.11 -2.04 9.63 22.61 0.22 -1.82 16 18 C -0.05 -0.49 10.17 22.44 0.23 -0.26 16 19 C -0.12 -1.31 9.88 22.46 0.22 -1.09 16 20 C 0.16 2.94 7.27 84.84 0.62 3.56 16 21 Cl -0.02 -0.44 29.10 -2.72 -0.08 -0.51 16 22 N -0.48 -12.00 9.52 -175.86 -1.67 -13.67 16 23 H 0.06 1.94 7.13 -2.39 -0.02 1.93 16 24 H 0.05 2.02 4.30 -2.39 -0.01 2.01 16 25 H 0.04 1.78 8.12 -2.39 -0.02 1.76 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.04 1.50 2.25 -2.38 -0.01 1.50 16 28 H 0.06 2.17 6.86 -2.39 -0.02 2.16 16 29 H 0.27 15.57 8.31 -92.72 -0.77 14.80 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.41 13.23 5.59 -92.70 -0.52 12.72 16 33 H 0.16 2.81 7.64 -2.91 -0.02 2.79 16 34 H 0.20 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -71.21 299.77 2.45 -68.76 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.37 Total: 14.60 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 4.36 Total: -7.16 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.70 Total: -98.61 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.56 Total: 45.36 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.51 kcal Total: -71.21 2.45 -68.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315806954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.301 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds