Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30365 * 126.34453 * 2 1 4 4 N 1.28539 * 110.01769 * 179.70362 * 3 2 1 5 5 C 1.31139 * 109.84043 * 0.45622 * 4 3 2 6 6 N 1.38990 * 126.46812 * 179.82277 * 5 4 3 7 7 C 1.34779 * 119.99905 * 359.68763 * 6 5 4 8 8 O 1.21275 * 119.99813 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99856 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46884 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99961 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00038 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00036 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99936 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47490 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47212 * 119.99978 * 15 13 11 18 18 H 1.48507 * 109.46986 * 239.99826 * 15 13 11 19 19 N 1.36442 * 107.06970 * 359.55783 * 5 4 3 20 20 C 1.46498 * 127.12190 * 180.22819 * 19 5 4 21 21 C 1.53002 * 117.49851 * 132.46032 * 20 19 5 22 22 C 1.53001 * 117.49811 * 63.80338 * 20 19 5 23 23 H 1.08998 * 109.47466 * 264.89615 * 1 2 3 24 24 H 1.09007 * 109.46833 * 24.89318 * 1 2 3 25 25 H 1.09000 * 109.47198 * 144.88450 * 1 2 3 26 26 H 0.97003 * 119.99760 * 179.68617 * 6 5 4 27 27 H 1.08998 * 109.46912 * 299.99125 * 9 7 6 28 28 H 1.08995 * 109.47484 * 59.99336 * 9 7 6 29 29 H 0.97002 * 119.99635 * 179.97438 * 14 13 11 30 30 H 1.08993 * 115.54792 * 278.13224 * 20 19 5 31 31 H 1.09002 * 117.49835 * 0.02562 * 21 20 19 32 32 H 1.09005 * 117.49647 * 145.02156 * 21 20 19 33 33 H 1.08996 * 117.49788 * 214.98097 * 22 20 19 34 34 H 1.09003 * 117.49750 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2796 1.0500 0.0000 4 7 3.5131 0.6887 0.0062 5 6 3.5935 -0.6202 0.0008 6 7 4.7598 -1.3762 0.0013 7 6 5.9602 -0.7633 0.0016 8 8 6.0226 0.4478 0.0010 9 6 7.2247 -1.5831 0.0016 10 16 8.6591 -0.4793 0.0013 11 6 9.9598 -1.6679 0.0022 12 1 9.7275 -2.7226 0.0031 13 6 11.2830 -1.2488 0.0017 14 7 11.5662 0.0367 0.0000 15 14 12.6619 -2.5089 0.0033 16 1 12.0829 -3.8763 0.0044 17 1 13.4996 -2.3277 -1.2095 18 1 13.4996 -2.3245 1.2156 19 7 2.3162 -1.0999 0.0005 20 6 1.8992 -2.5043 -0.0001 21 6 0.8198 -2.9211 1.0009 22 6 2.2724 -3.3525 1.2174 23 1 -0.3634 -0.0914 1.0236 24 1 -0.3633 0.9323 -0.4326 25 1 -0.3633 -0.8406 -0.5911 26 1 4.7098 -2.3450 0.0015 27 1 7.2500 -2.2119 0.8916 28 1 7.2502 -2.2118 -0.8883 29 1 12.4909 0.3296 0.0000 30 1 1.8989 -2.9941 -0.9738 31 1 0.4195 -2.1503 1.6595 32 1 0.1095 -3.6856 0.6858 33 1 2.5172 -4.4005 1.0447 34 1 2.8285 -2.8657 2.0186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331796161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = 84.841926 kcal Electronic energy + Delta-G solvation = -19146.048582 eV Core-core repulsion = 16015.439827 eV Total energy + Delta-G solvation = -3130.608755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.05347 -39.32799 -38.08148 -34.89283 -33.04554 -32.46479 -31.75290 -29.51088 -27.11935 -25.53319 -24.11567 -23.43722 -22.39325 -20.86767 -19.83609 -18.45177 -17.69842 -17.02450 -16.44429 -16.21873 -15.49232 -14.85636 -14.83698 -14.38585 -14.16174 -13.82341 -13.43600 -13.31915 -12.85955 -12.65023 -12.28033 -12.19381 -11.77758 -11.44108 -11.32757 -11.09694 -11.05873 -10.81704 -10.80787 -10.20351 -10.13786 -9.87187 -9.58020 -9.10762 -8.29328 -8.29140 -6.55376 -6.24922 -3.96793 1.64920 1.77684 2.75603 2.79180 2.83395 3.19730 3.22195 3.25802 3.28798 3.47531 3.92107 4.02545 4.14794 4.15906 4.36363 4.71036 4.78030 4.92472 5.02436 5.10379 5.16295 5.22774 5.32881 5.37279 5.47667 5.51300 5.63474 5.73428 5.77346 5.99203 6.31123 6.88465 7.23218 7.56304 8.31312 8.33286 8.89349 9.20156 10.82458 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.003477 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.408981 B = 8051.591335 C = 8757.933771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.279 5.279 4 N -0.273 5.273 5 C 0.417 3.583 6 N -0.640 5.640 7 C 0.527 3.473 8 O -0.445 6.445 9 C -0.147 4.147 10 S -0.050 6.050 11 C -0.538 4.538 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.865 5.865 15 Si 0.920 3.080 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.279 1.279 19 N -0.473 5.473 20 C 0.043 3.957 21 C -0.159 4.159 22 C -0.173 4.173 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.414 0.586 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.269 0.731 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 -11.403 0.935 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 N -0.119 5.119 4 N -0.118 5.118 5 C 0.062 3.938 6 N -0.296 5.296 7 C 0.312 3.688 8 O -0.309 6.309 9 C -0.298 4.298 10 S 0.176 5.824 11 C -0.686 4.686 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.500 5.500 15 Si 0.747 3.253 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.173 5.173 20 C -0.062 4.062 21 C -0.196 4.196 22 C -0.211 4.211 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.250 0.750 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.917 -7.732 0.931 24.204 hybrid contribution 0.460 -4.205 -0.048 4.231 sum -22.457 -11.938 0.883 25.448 Atomic orbital electron populations 1.20164 0.83709 1.04507 1.03333 1.24639 0.96414 0.81990 1.07027 1.74232 0.96420 1.23636 1.17576 1.75093 1.10292 1.04340 1.22077 1.21325 0.80020 0.89753 1.02678 1.42916 1.01622 1.09546 1.75467 1.20649 0.82733 0.89278 0.76150 1.90869 1.85022 1.13362 1.41693 1.23508 0.96812 1.04007 1.05437 1.85581 0.91992 1.08089 1.96735 1.22891 0.92336 0.94119 1.59281 0.90741 1.25003 0.98171 0.95945 0.94453 1.70025 1.19763 1.13685 1.46560 0.86096 0.80821 0.80488 0.77943 1.19619 1.20539 1.20533 1.45664 1.05096 1.06803 1.59692 1.22034 1.07098 0.79852 0.97169 1.23374 0.92365 1.03562 1.00320 1.23501 0.98635 1.00813 0.98141 0.90141 0.88747 0.90538 0.75011 0.88655 0.88645 0.92120 0.84365 0.87485 0.86518 0.86348 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 9.16 36.00 0.33 -0.07 16 2 C 0.17 2.09 7.96 -154.13 -1.23 0.86 16 3 N -0.28 -4.92 12.18 32.97 0.40 -4.52 16 4 N -0.27 -5.52 10.45 30.38 0.32 -5.20 16 5 C 0.42 6.70 8.53 -318.39 -2.72 3.98 16 6 N -0.64 -9.35 5.40 -12.41 -0.07 -9.42 16 7 C 0.53 10.17 7.81 -10.99 -0.09 10.08 16 8 O -0.45 -10.82 14.59 5.56 0.08 -10.74 16 9 C -0.15 -2.85 6.16 36.00 0.22 -2.63 16 10 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 11 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 15 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 N -0.47 -5.49 3.09 -106.94 -0.33 -5.82 16 20 C 0.04 0.28 6.23 -67.93 -0.42 -0.14 16 21 C -0.16 -0.65 9.55 -26.69 -0.25 -0.90 16 22 C -0.17 -0.87 10.45 -26.69 -0.28 -1.15 16 23 H 0.08 0.43 7.84 -51.93 -0.41 0.02 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.36 8.02 -51.93 -0.42 -0.06 16 26 H 0.41 4.17 8.56 -40.82 -0.35 3.82 16 27 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.50 7.41 -51.93 -0.38 0.12 16 32 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -38.68 316.17 -9.63 -48.31 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.06 Total: -1.96 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -4.24 Total: -2.71 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 1.06 Total: -50.18 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -38.68 -9.63 -48.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331796161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.151 kcal (2) G-P(sol) polarization free energy of solvation -38.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds