Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47163 * 2 1 4 4 C 1.46498 * 119.99918 * 270.00224 * 3 2 1 5 5 C 1.34780 * 120.00055 * 89.99860 * 3 2 1 6 6 O 1.21582 * 119.99911 * 0.02562 * 5 3 2 7 7 N 1.34774 * 119.99694 * 180.27254 * 5 3 2 8 8 C 1.39280 * 119.99704 * 174.96264 * 7 5 3 9 9 C 1.39467 * 119.83702 * 34.42899 * 8 7 5 10 10 C 1.36375 * 120.17472 * 179.71857 * 9 8 7 11 11 C 1.40886 * 119.85057 * 0.55549 * 10 9 8 12 12 C 1.41156 * 120.15994 * 179.74380 * 11 10 9 13 13 H 1.07991 * 120.00534 * 148.65607 * 12 11 10 14 14 C 1.39897 * 119.99544 * 328.65113 * 12 11 10 15 15 N 1.30888 * 119.99697 * 167.62856 * 14 12 11 16 16 Si 1.86795 * 120.00493 * 347.63205 * 14 12 11 17 17 H 1.48507 * 109.47083 * 92.55536 * 16 14 12 18 18 H 1.48495 * 109.47412 * 212.55955 * 16 14 12 19 19 H 1.48506 * 109.47057 * 332.55988 * 16 14 12 20 20 C 1.40841 * 119.68434 * 359.72465 * 11 10 9 21 21 C 1.36469 * 119.81763 * 359.97438 * 20 11 10 22 22 Cl 1.73601 * 119.92673 * 179.97438 * 21 20 11 23 23 H 1.08997 * 109.47325 * 299.99938 * 1 2 3 24 24 H 1.08998 * 109.47376 * 60.00022 * 1 2 3 25 25 H 1.08998 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47062 * 239.99819 * 2 1 3 27 27 H 1.08998 * 109.47376 * 119.99978 * 2 1 3 28 28 H 1.09005 * 109.47086 * 269.99614 * 4 3 2 29 29 H 1.08999 * 109.47472 * 30.00093 * 4 3 2 30 30 H 1.09011 * 109.47159 * 149.99952 * 4 3 2 31 31 H 0.96997 * 120.00641 * 354.96838 * 7 5 3 32 32 H 1.07998 * 119.90971 * 359.97438 * 9 8 7 33 33 H 1.08006 * 120.07578 * 180.25619 * 10 9 8 34 34 H 0.96995 * 120.00229 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.09282 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 2.2429 2.0165 1.1672 6 8 2.0407 1.4432 2.2202 7 7 2.6870 3.2890 1.1671 8 6 2.8191 3.9805 2.3689 9 6 3.2034 3.2986 3.5232 10 6 3.3404 3.9699 4.7024 11 6 3.0814 5.3537 4.7557 12 6 3.2159 6.0540 5.9739 13 1 3.5197 7.0903 5.9704 14 6 2.9556 5.4055 7.1858 15 7 3.3073 5.9645 8.3159 16 14 2.1062 3.7418 7.1914 17 1 3.1281 2.6643 7.1825 18 1 1.2673 3.6184 8.4105 19 1 1.2480 3.6202 5.9856 20 6 2.6880 6.0352 3.5876 21 6 2.5609 5.3516 2.4134 22 17 2.0755 6.1886 0.9720 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2919 1.9005 -1.5834 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 2.9145 3.7234 0.3302 32 1 3.3970 2.2369 3.4822 33 1 3.6421 3.4410 5.5944 34 1 3.1272 5.5147 9.1562 35 1 2.4881 7.0961 3.6209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334533580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -9.420614 kcal Electronic energy + Delta-G solvation = -19858.641345 eV Core-core repulsion = 16689.608603 eV Total energy + Delta-G solvation = -3169.032743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27560 -38.08986 -35.84302 -35.73532 -34.57106 -33.22492 -31.15570 -29.81615 -29.36618 -26.75639 -25.12149 -23.13826 -21.95250 -21.02990 -19.38658 -18.21408 -17.59530 -16.90878 -15.90339 -15.39850 -15.03145 -14.50852 -14.35567 -14.02106 -13.44225 -13.39617 -12.91173 -12.84908 -12.60898 -12.59604 -12.47495 -12.24946 -11.92151 -11.57619 -11.06424 -11.05325 -10.86858 -10.63383 -10.41637 -10.18414 -9.82500 -9.66876 -9.22665 -9.07135 -8.65560 -7.79901 -7.24337 -6.99984 -4.54115 2.25891 2.48615 2.78616 2.92233 3.12059 3.22496 3.34338 3.51634 3.97012 4.18700 4.39437 4.91630 4.96743 5.10703 5.26221 5.35010 5.38804 5.48755 5.62220 5.84147 5.93154 6.15580 6.22056 6.42721 6.53182 6.56486 6.76725 6.88997 6.97736 7.19672 7.37269 7.49511 7.73198 7.85264 8.21543 8.24121 8.46710 8.68539 8.91134 10.01199 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.005773 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.702768 B = 4848.903074 C = 5966.376811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.638 5.638 4 C 0.079 3.921 5 C 0.700 3.300 6 O -0.576 6.576 7 N -0.665 5.665 8 C 0.022 3.978 9 C -0.053 4.053 10 C -0.225 4.225 11 C 0.094 3.906 12 C -0.435 4.435 13 H 0.094 0.906 14 C 0.083 3.917 15 N -0.806 5.806 16 Si 0.911 3.089 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.240 1.240 20 C -0.189 4.189 21 C -0.001 4.001 22 Cl -0.115 7.115 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -7.530 -15.753 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.377 5.377 4 C -0.065 4.065 5 C 0.402 3.598 6 O -0.453 6.453 7 N -0.313 5.313 8 C -0.073 4.073 9 C -0.073 4.073 10 C -0.244 4.244 11 C 0.090 3.910 12 C -0.463 4.463 13 H 0.112 0.888 14 C -0.136 4.136 15 N -0.430 5.430 16 Si 0.738 3.262 17 H -0.194 1.194 18 H -0.218 1.218 19 H -0.163 1.163 20 C -0.210 4.210 21 C -0.029 4.029 22 Cl -0.087 7.087 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.569 -7.831 -14.845 16.979 hybrid contribution -0.302 -0.284 -0.500 0.649 sum -2.871 -8.115 -15.344 17.594 Atomic orbital electron populations 1.22157 0.96294 1.01845 1.02408 1.21231 0.94043 0.81168 1.02788 1.47070 1.71034 1.14870 1.04693 1.21701 1.01131 0.97576 0.86064 1.15897 0.78426 0.81752 0.83752 1.90892 1.58746 1.66158 1.29484 1.42145 1.68166 1.12305 1.08722 1.16587 1.15418 0.88930 0.86321 1.20498 0.96353 0.99280 0.91200 1.20850 1.10839 0.95539 0.97204 1.17657 0.89109 0.91326 0.92912 1.19450 1.38223 1.00182 0.88460 0.88760 1.26171 0.93176 0.99456 0.94829 1.69664 1.34823 1.39205 0.99276 0.86325 0.80486 0.80719 0.78689 1.19443 1.21843 1.16343 1.20546 1.09652 0.99753 0.91019 1.20301 1.05003 0.90845 0.86771 1.98262 1.90967 1.78832 1.40626 0.91960 0.92917 0.91836 0.90969 0.89775 0.92774 0.90960 0.91485 0.76822 0.85706 0.87381 0.90214 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.13 1.45 6.13 -4.04 -0.02 1.43 16 3 N -0.64 -8.35 2.87 -187.35 -0.54 -8.89 16 4 C 0.08 0.72 10.17 59.85 0.61 1.33 16 5 C 0.70 12.45 8.12 -86.92 -0.71 11.75 16 6 O -0.58 -12.45 13.27 5.29 0.07 -12.38 16 7 N -0.67 -11.74 4.86 -14.07 -0.07 -11.80 16 8 C 0.02 0.46 6.33 -83.52 -0.53 -0.07 16 9 C -0.05 -1.23 8.62 -39.80 -0.34 -1.57 16 10 C -0.22 -5.48 6.94 -39.25 -0.27 -5.75 16 11 C 0.09 2.34 5.13 -106.80 -0.55 1.79 16 12 C -0.43 -11.49 9.59 -37.85 -0.36 -11.85 16 13 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 14 C 0.08 2.16 5.46 -17.33 -0.09 2.06 16 15 N -0.81 -21.19 13.93 55.55 0.77 -20.41 16 16 Si 0.91 21.23 24.40 -169.99 -4.15 17.08 16 17 H -0.27 -6.10 6.66 56.52 0.38 -5.73 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.24 -5.89 6.68 56.52 0.38 -5.52 16 20 C -0.19 -4.32 9.50 -39.24 -0.37 -4.69 16 21 C 0.00 -0.02 6.30 -39.72 -0.25 -0.27 16 22 Cl -0.12 -1.97 27.91 -51.86 -1.45 -3.42 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 27 H 0.08 1.08 7.42 -51.93 -0.39 0.70 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.07 0.62 6.43 -51.92 -0.33 0.29 16 31 H 0.40 5.83 5.84 -40.82 -0.24 5.59 16 32 H 0.13 2.89 6.13 -52.49 -0.32 2.56 16 33 H 0.11 2.63 4.42 -52.48 -0.23 2.40 16 34 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 35 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -29.31 303.58 -7.37 -36.67 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.07 Total: 5.81 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.51 Total: -7.23 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.17 Total: -41.11 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.15 Total: 17.08 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.45 Total: -3.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.31 -7.37 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334533580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.254 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds