Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00213 * 2 1 4 4 C 1.46898 * 111.00309 * 123.95789 * 2 1 3 5 5 H 1.09009 * 109.46675 * 301.10224 * 4 2 1 6 6 C 1.50696 * 109.47490 * 61.09906 * 4 2 1 7 7 O 1.21296 * 119.99694 * 27.93752 * 6 4 2 8 8 N 1.34776 * 120.00570 * 207.66805 * 6 4 2 9 9 C 1.37097 * 120.00443 * 180.27588 * 8 6 4 10 10 H 1.07998 * 119.99693 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99881 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00625 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99642 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46966 * 90.00063 * 13 11 9 15 15 H 1.48498 * 109.46977 * 209.99813 * 13 11 9 16 16 H 1.48497 * 109.47103 * 329.99795 * 13 11 9 17 17 C 1.50694 * 109.47535 * 181.10359 * 4 2 1 18 18 C 1.38269 * 119.99214 * 313.05287 * 17 4 2 19 19 C 1.38217 * 120.02564 * 179.76765 * 18 17 4 20 20 C 1.38237 * 120.01679 * 0.50567 * 19 18 17 21 21 C 1.38336 * 119.98227 * 359.74955 * 20 19 18 22 22 Cl 1.73601 * 120.00951 * 180.02562 * 21 20 19 23 23 C 1.38188 * 119.99844 * 133.32812 * 17 4 2 24 24 H 1.09003 * 109.46809 * 299.99710 * 1 2 3 25 25 H 1.09002 * 109.47238 * 59.99617 * 1 2 3 26 26 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47576 * 185.11189 * 3 2 1 28 28 H 1.09000 * 109.47121 * 305.10991 * 3 2 1 29 29 H 1.09001 * 109.47370 * 65.10833 * 3 2 1 30 30 H 0.97007 * 119.99419 * 0.26909 * 8 6 4 31 31 H 0.96998 * 120.00301 * 180.02562 * 12 11 9 32 32 H 1.08003 * 119.98344 * 0.02562 * 18 17 4 33 33 H 1.08000 * 119.99323 * 180.25485 * 19 18 17 34 34 H 1.07994 * 120.01109 * 179.72222 * 20 19 18 35 35 H 1.08009 * 120.00649 * 0.02562 * 23 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6300 -0.3318 2.0682 6 6 1.5345 -2.1972 1.0359 7 8 1.2981 -2.6824 -0.0503 8 7 1.3902 -2.9396 2.1514 9 6 0.9763 -4.2433 2.0585 10 1 0.7655 -4.6752 1.0914 11 6 0.8280 -5.0087 3.2086 12 7 1.0850 -4.4833 4.3854 13 14 0.2634 -6.7849 3.0820 14 1 1.4464 -7.6717 2.9433 15 1 -0.4903 -7.1532 4.3074 16 1 -0.6148 -6.9417 1.8949 17 6 3.5016 -0.7209 1.1195 18 6 4.1863 -0.9617 -0.0573 19 6 5.5676 -0.9158 -0.0757 20 6 6.2658 -0.6394 1.0850 21 6 5.5815 -0.4036 2.2639 22 17 6.4576 -0.0558 3.7217 23 6 4.1985 -0.4446 2.2804 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.0812 1.3438 -0.0916 28 1 1.5739 1.9224 -0.8407 29 1 1.7218 1.8656 0.9322 30 1 1.5793 -2.5514 3.0201 31 1 0.9819 -5.0178 5.1882 32 1 3.6414 -1.1817 -0.9635 33 1 6.1018 -1.0999 -0.9961 34 1 7.3452 -0.6080 1.0715 35 1 3.6637 -0.2613 3.2007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339924691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -8.509636 kcal Electronic energy + Delta-G solvation = -20058.611931 eV Core-core repulsion = 16889.618692 eV Total energy + Delta-G solvation = -3168.993240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87664 -38.12961 -36.48060 -36.02238 -33.88700 -31.84510 -31.04583 -30.50205 -27.69471 -26.94140 -24.78695 -22.66149 -22.33685 -21.29147 -19.05802 -17.90619 -16.93090 -16.29318 -15.50939 -15.49792 -14.79940 -14.52743 -14.39782 -13.90176 -13.59707 -13.56053 -13.26586 -13.12837 -12.41771 -12.09518 -12.04351 -11.76827 -11.50244 -11.46320 -11.26112 -11.16712 -11.10576 -11.01610 -10.61860 -10.41045 -10.24692 -9.51765 -9.00713 -8.57441 -8.23008 -7.99739 -7.93629 -6.44409 -3.85198 1.34240 1.40640 2.23827 3.15989 3.25393 3.30655 3.67654 3.91074 4.00581 4.25998 4.84357 4.96018 5.06085 5.20655 5.27716 5.40534 5.49848 5.54988 5.57251 5.61500 5.77900 5.86469 5.94032 6.00084 6.01877 6.22317 6.31777 6.38879 6.54519 6.72311 6.97067 7.22295 7.32146 7.52477 8.02314 8.57308 9.14430 9.49743 10.00914 10.72880 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.006220 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.420677 B = 4500.608160 C = 5790.367794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.516 5.516 3 C 0.023 3.977 4 C 0.115 3.885 5 H 0.055 0.945 6 C 0.450 3.550 7 O -0.571 6.571 8 N -0.557 5.557 9 C -0.300 4.300 10 H 0.104 0.896 11 C 0.025 3.975 12 N -0.898 5.898 13 Si 0.929 3.071 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.269 1.269 17 C -0.053 4.053 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.036 4.036 22 Cl -0.079 7.079 23 C -0.102 4.102 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.391 0.609 31 H 0.272 0.728 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 11.261 -3.413 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.240 5.240 3 C -0.125 4.125 4 C 0.003 3.997 5 H 0.073 0.927 6 C 0.234 3.766 7 O -0.454 6.454 8 N -0.192 5.192 9 C -0.429 4.429 10 H 0.122 0.878 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.756 3.244 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.055 4.055 18 C -0.094 4.094 19 C -0.133 4.133 20 C -0.133 4.133 21 C -0.062 4.062 22 Cl -0.051 7.051 23 C -0.122 4.122 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.224 0.776 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.921 10.634 -4.249 13.381 hybrid contribution -0.303 -0.246 1.603 1.650 sum 6.617 10.389 -2.646 12.598 Atomic orbital electron populations 1.22412 0.86506 1.03621 0.99670 1.61650 1.08389 1.12332 1.41626 1.22442 1.01123 0.88867 1.00097 1.20460 0.90842 0.95473 0.92972 0.92704 1.19338 0.85259 0.86519 0.85469 1.90529 1.55397 1.72357 1.27147 1.41885 1.58413 1.11727 1.07213 1.19701 1.41600 0.86571 0.95048 0.87803 1.25268 0.97442 1.00431 0.94616 1.69609 1.48632 1.37755 0.97854 0.85868 0.78811 0.81874 0.77821 1.20345 1.20889 1.19346 1.19456 0.94124 0.98761 0.93119 1.21255 0.93621 0.95690 0.98827 1.21116 0.94248 1.00244 0.97714 1.20995 1.00099 1.00902 0.91347 1.20744 0.92128 1.05545 0.87794 1.98351 1.76329 1.93589 1.36793 1.20927 0.92080 1.00468 0.98695 0.96206 0.91520 0.89812 0.91270 0.91410 0.95968 0.77559 0.91780 0.84140 0.85220 0.85369 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.29 60.06 0.56 0.97 16 2 N -0.52 -8.60 4.15 -246.01 -1.02 -9.62 16 3 C 0.02 0.30 9.14 60.06 0.55 0.85 16 4 C 0.11 2.10 2.06 -70.02 -0.14 1.96 16 5 H 0.06 0.96 7.94 -51.92 -0.41 0.55 16 6 C 0.45 10.51 5.78 -10.99 -0.06 10.44 16 7 O -0.57 -15.13 15.26 5.54 0.08 -15.05 16 8 N -0.56 -14.05 5.29 -10.97 -0.06 -14.10 16 9 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 11 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 12 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 13 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 C -0.05 -0.90 3.56 -104.63 -0.37 -1.27 16 18 C -0.08 -1.21 8.36 -39.58 -0.33 -1.54 16 19 C -0.11 -1.54 10.05 -39.59 -0.40 -1.94 16 20 C -0.11 -1.51 9.83 -39.55 -0.39 -1.90 16 21 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 22 Cl -0.08 -1.06 28.96 -51.86 -1.50 -2.56 16 23 C -0.10 -1.61 9.45 -39.55 -0.37 -1.98 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.61 6.39 -51.93 -0.33 1.28 16 27 H 0.07 0.90 6.37 -51.93 -0.33 0.57 16 28 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.14 2.40 7.93 -52.48 -0.42 1.98 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.13 1.95 7.99 -52.48 -0.42 1.54 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -29.82 315.26 -7.78 -37.60 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.28 Total: 9.65 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.45 Total: -3.02 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.35 Total: -47.28 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.82 -7.78 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339924691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds