Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46986 * 119.99876 * 8 6 4 11 11 H 1.48494 * 109.47457 * 240.00237 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 C 1.34776 * 119.99384 * 120.00492 * 12 2 1 15 15 O 1.21282 * 120.00477 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99436 * 180.02562 * 14 12 2 17 17 C 1.50704 * 109.46672 * 179.97438 * 16 14 12 18 18 C 1.38229 * 119.60291 * 124.72782 * 17 16 14 19 19 C 1.38606 * 119.17916 * 179.79014 * 18 17 16 20 20 C 1.38780 * 118.40514 * 0.47205 * 19 18 17 21 21 Cl 1.73601 * 120.43310 * 179.76917 * 20 19 18 22 22 C 1.38308 * 119.13645 * 359.74575 * 20 19 18 23 23 N 1.31844 * 119.60513 * 304.99233 * 17 16 14 24 24 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 25 25 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 29 29 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 30 30 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 31 31 H 1.08994 * 109.47107 * 299.99531 * 16 14 12 32 32 H 1.08995 * 109.47415 * 59.99832 * 16 14 12 33 33 H 1.08008 * 120.40954 * 359.97438 * 18 17 16 34 34 H 1.07996 * 120.80028 * 180.19341 * 19 18 17 35 35 H 1.08011 * 119.62785 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0860 1.1256 -1.8915 16 6 3.2951 -0.7459 -3.3141 17 6 4.1320 0.2015 -4.1345 18 6 5.4254 -0.1488 -4.4741 19 6 6.1858 0.7272 -5.2326 20 6 5.6172 1.9340 -5.6152 21 17 6.5242 3.0729 -6.5607 22 6 4.3183 2.2174 -5.2337 23 7 3.6236 1.3568 -4.5154 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7090 1.1613 3.4844 28 1 0.7376 -2.1443 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 3.9005 -1.6025 -3.0177 32 1 2.4472 -1.0880 -3.9073 33 1 5.8373 -1.0949 -4.1547 34 1 7.1980 0.4787 -5.5154 35 1 3.8681 3.1544 -5.5267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339932974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = -5.377016 kcal Electronic energy + Delta-G solvation = -19494.984127 eV Core-core repulsion = 16326.126728 eV Total energy + Delta-G solvation = -3168.857399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45399 -38.79213 -36.77868 -35.28086 -33.08370 -32.56760 -32.40014 -29.67528 -27.69291 -26.01657 -25.19865 -23.84368 -22.79643 -20.88079 -18.34602 -17.17892 -16.84904 -16.53760 -16.15791 -15.66326 -15.14665 -14.76378 -14.29621 -14.05243 -13.66213 -13.22200 -12.94816 -12.54475 -12.43820 -12.22107 -12.07219 -11.69074 -11.53577 -11.46237 -11.32425 -11.04340 -10.81545 -10.65107 -10.22274 -10.16335 -9.92423 -9.49616 -9.16313 -9.02659 -8.73469 -8.41134 -7.54435 -6.06189 -4.14242 0.84289 1.12173 1.88990 3.25872 3.33531 3.35865 3.43947 3.56806 4.02487 4.24857 4.40380 4.57343 4.61740 4.84019 5.07648 5.24442 5.30403 5.40091 5.50975 5.59107 5.73280 5.83000 5.91838 6.05629 6.37153 6.41754 6.79104 6.87577 7.10261 7.46134 7.56851 7.73703 7.92842 8.04700 8.22243 8.56163 8.85475 9.10826 9.52347 10.99098 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.003578 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.479256 B = 7823.187158 C = 7969.260412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.595 5.595 13 C 0.083 3.917 14 C 0.510 3.490 15 O -0.535 6.535 16 C -0.097 4.097 17 C 0.159 3.841 18 C -0.157 4.157 19 C -0.067 4.067 20 C -0.098 4.098 21 Cl -0.064 7.064 22 C 0.122 3.878 23 N -0.437 5.437 24 H 0.011 0.989 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -4.116 -16.487 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.295 3.705 15 O -0.413 6.413 16 C -0.137 4.137 17 C 0.021 3.979 18 C -0.177 4.177 19 C -0.094 4.094 20 C -0.127 4.127 21 Cl -0.036 7.036 22 C -0.037 4.037 23 N -0.145 5.145 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.719 -3.077 -16.050 17.670 hybrid contribution 1.261 -0.667 0.592 1.544 sum 7.980 -3.744 -15.458 17.795 Atomic orbital electron populations 1.22074 0.98232 0.99322 1.00793 1.18917 0.90845 0.94511 0.79841 0.91959 1.21367 1.31742 1.12971 0.90345 0.92217 1.24902 0.94981 0.94987 0.98972 1.69896 1.36391 1.22596 1.23609 0.86450 0.78584 0.79568 0.82834 1.19831 1.20948 1.20944 1.48211 1.49294 1.11594 1.23649 1.21609 0.98738 0.83385 1.02400 1.19926 0.79682 0.87155 0.83741 1.90688 1.57805 1.16667 1.76107 1.20756 1.00403 0.97132 0.95421 1.20864 0.91877 0.91722 0.93467 1.21966 0.94533 1.01392 0.99828 1.21434 1.00404 0.91770 0.95766 1.22106 0.95097 0.93718 1.01804 1.98365 1.74263 1.60042 1.70926 1.22809 0.89156 0.98936 0.92828 1.67661 1.37043 1.01851 1.07958 0.96973 0.95219 0.88927 0.92757 0.93869 0.92899 0.90080 0.87614 0.87323 0.83839 0.83908 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.42 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.60 -12.54 2.75 -175.26 -0.48 -13.02 16 13 C 0.08 1.32 9.24 59.85 0.55 1.87 16 14 C 0.51 10.47 7.61 -10.98 -0.08 10.38 16 15 O -0.54 -13.45 14.66 5.56 0.08 -13.37 16 16 C -0.10 -1.38 4.65 -29.03 -0.14 -1.51 16 17 C 0.16 2.35 5.76 -82.59 -0.48 1.87 16 18 C -0.16 -1.82 9.71 -39.45 -0.38 -2.20 16 19 C -0.07 -0.73 9.98 -39.25 -0.39 -1.12 16 20 C -0.10 -1.18 6.34 -39.36 -0.25 -1.43 16 21 Cl -0.06 -0.67 28.99 -51.86 -1.50 -2.17 16 22 C 0.12 1.68 10.99 -17.51 -0.19 1.49 16 23 N -0.44 -7.25 9.22 -9.44 -0.09 -7.34 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 31 H 0.11 1.17 7.13 -51.93 -0.37 0.80 16 32 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 33 H 0.14 1.21 7.95 -52.48 -0.42 0.80 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -32.90 312.31 -7.45 -40.34 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.19 Total: -0.34 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.58 Total: -0.14 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.06 Total: -44.97 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.90 -7.45 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.968 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds