Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46746 * 2 1 4 4 C 1.46505 * 119.99738 * 269.99955 * 3 2 1 5 5 C 1.50692 * 109.47050 * 270.00024 * 4 3 2 6 6 O 1.21293 * 120.00482 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99754 * 180.02562 * 5 4 3 8 8 C 1.37105 * 119.99931 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99838 * 0.02562 * 8 7 5 10 10 C 1.38949 * 119.99693 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00253 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99597 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47050 * 60.00441 * 12 10 8 14 14 H 1.48497 * 109.46841 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47302 * 300.00054 * 12 10 8 16 16 C 1.39668 * 119.99761 * 90.00388 * 3 2 1 17 17 C 1.38940 * 120.06905 * 359.97431 * 16 3 2 18 18 C 1.38093 * 119.94924 * 180.02562 * 17 16 3 19 19 C 1.38288 * 120.08810 * 359.97438 * 18 17 16 20 20 C 1.38387 * 120.13771 * 0.04117 * 19 18 17 21 21 Cl 1.73596 * 119.97635 * 180.02562 * 20 19 18 22 22 C 1.38245 * 120.04856 * 359.96022 * 20 19 18 23 23 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46954 * 299.99732 * 1 2 3 25 25 H 1.09000 * 109.47688 * 60.00247 * 1 2 3 26 26 H 1.09000 * 109.46954 * 240.00268 * 2 1 3 27 27 H 1.09000 * 109.47688 * 119.99753 * 2 1 3 28 28 H 1.09000 * 109.47103 * 30.00664 * 4 3 2 29 29 H 1.09005 * 109.46706 * 150.00136 * 4 3 2 30 30 H 0.96995 * 120.00118 * 0.02562 * 7 5 4 31 31 H 0.97004 * 119.99851 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.02748 * 0.02562 * 17 16 3 33 33 H 1.08001 * 119.95540 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.92927 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.04656 * 180.29874 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8352 -1.7038 6 8 4.4234 1.1560 -1.0215 7 7 4.1387 2.3782 -2.8511 8 6 5.4337 2.1632 -3.2467 9 1 6.0906 1.5585 -2.6391 10 6 5.9007 2.7226 -4.4298 11 7 5.1012 3.4580 -5.1693 12 14 7.6650 2.4291 -4.9691 13 1 7.8925 0.9724 -5.1467 14 1 7.9121 3.1286 -6.2554 15 1 8.5924 2.9525 -3.9343 16 6 2.2510 2.0397 1.2096 17 6 2.0196 1.3862 2.4137 18 6 2.2501 2.0396 3.6082 19 6 2.7114 3.3432 3.6074 20 6 2.9429 3.9977 2.4103 21 17 3.5227 5.6340 2.4143 22 6 2.7140 3.3490 1.2112 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5815 1.6878 -2.0284 29 1 2.0953 3.1412 -1.1384 30 1 3.5488 2.9216 -3.3966 31 1 5.4271 3.8482 -5.9955 32 1 1.6596 0.3679 2.4154 33 1 2.0698 1.5319 4.5442 34 1 2.8912 3.8517 4.5431 35 1 2.8993 3.8581 0.2770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343043821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = -11.446710 kcal Electronic energy + Delta-G solvation = -19653.303504 eV Core-core repulsion = 16484.182903 eV Total energy + Delta-G solvation = -3169.120601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70051 -38.09665 -36.59598 -35.69404 -33.90963 -31.76232 -31.25566 -30.29186 -29.52140 -26.68666 -24.53873 -23.26201 -22.10275 -20.71431 -19.21038 -18.00644 -17.53352 -16.20167 -15.76220 -15.44020 -14.98663 -14.60234 -14.21689 -14.00624 -13.86242 -13.46124 -13.25415 -13.24041 -12.87947 -12.29750 -12.06481 -11.58275 -11.54039 -11.50855 -11.39705 -11.13399 -11.00038 -10.81040 -10.59784 -10.46315 -10.24890 -9.81186 -9.53383 -8.58372 -8.47928 -8.00808 -7.06185 -6.44501 -3.85942 1.44424 1.72009 2.32967 3.17888 3.23909 3.24942 3.31473 3.82703 3.95632 4.16724 4.92580 4.97773 5.02408 5.18434 5.27350 5.32781 5.34106 5.43666 5.58655 5.59734 5.74003 5.78013 5.82660 5.85350 6.01500 6.20389 6.22432 6.38478 6.52018 6.59939 6.84813 7.41865 7.51942 7.67711 8.01621 8.56679 9.14222 9.48907 9.99965 10.72276 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.005128 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.490799 B = 5459.122281 C = 6682.003124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.595 5.595 4 C 0.108 3.892 5 C 0.416 3.584 6 O -0.582 6.582 7 N -0.560 5.560 8 C -0.300 4.300 9 H 0.102 0.898 10 C 0.025 3.975 11 N -0.900 5.900 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.250 3.750 17 C -0.199 4.199 18 C -0.063 4.063 19 C -0.183 4.183 20 C 0.018 3.982 21 Cl -0.080 7.080 22 C -0.186 4.186 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.392 0.608 31 H 0.273 0.727 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 -1.388 11.784 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.302 5.302 4 C -0.020 4.020 5 C 0.201 3.799 6 O -0.466 6.466 7 N -0.197 5.197 8 C -0.430 4.430 9 H 0.119 0.881 10 C -0.177 4.177 11 N -0.541 5.541 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.146 3.854 17 C -0.221 4.221 18 C -0.082 4.082 19 C -0.204 4.204 20 C -0.009 4.009 21 Cl -0.051 7.051 22 C -0.209 4.209 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.775 -1.709 11.854 15.459 hybrid contribution 0.717 0.405 -0.842 1.178 sum -9.058 -1.304 11.012 14.318 Atomic orbital electron populations 1.22251 0.96540 1.01754 1.02395 1.21361 0.93134 0.82259 1.03264 1.46096 1.69026 1.13006 1.02026 1.21278 0.96376 0.98370 0.85940 1.20500 0.89663 0.85917 0.83840 1.90539 1.57988 1.42898 1.55157 1.41890 1.12754 1.45319 1.19712 1.19639 0.87843 1.30149 1.05360 0.88066 1.25253 1.00040 0.96352 0.96087 1.69597 1.36370 1.33366 1.14777 0.85931 0.81989 0.78604 0.77797 1.19919 1.20903 1.19857 1.17580 0.91358 0.90375 0.86095 1.20705 1.09718 1.00757 0.90930 1.20724 0.96547 0.93544 0.97375 1.20664 1.07552 0.95932 0.96243 1.20556 0.99889 0.85857 0.94637 1.98352 1.87360 1.20438 1.98977 1.20523 1.08192 0.94636 0.97562 0.91890 0.92416 0.92435 0.90492 0.90731 0.89095 0.89191 0.77455 0.91751 0.85699 0.85673 0.85851 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.12 1.63 5.88 -4.04 -0.02 1.61 16 3 N -0.59 -9.50 2.10 -173.12 -0.36 -9.87 16 4 C 0.11 1.83 5.64 -5.19 -0.03 1.80 16 5 C 0.42 9.57 7.85 -10.99 -0.09 9.48 16 6 O -0.58 -15.64 16.01 5.55 0.09 -15.55 16 7 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 8 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 9 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 10 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 11 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 12 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 16 C 0.25 4.05 6.55 -83.79 -0.55 3.50 16 17 C -0.20 -2.75 9.21 -39.37 -0.36 -3.11 16 18 C -0.06 -0.79 10.04 -39.62 -0.40 -1.18 16 19 C -0.18 -2.47 9.83 -39.51 -0.39 -2.86 16 20 C 0.02 0.28 6.32 -39.52 -0.25 0.03 16 21 Cl -0.08 -1.17 28.95 -51.86 -1.50 -2.68 16 22 C -0.19 -3.14 8.99 -39.34 -0.35 -3.49 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 27 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 28 H 0.09 1.32 8.07 -51.93 -0.42 0.91 16 29 H 0.09 1.41 6.20 -51.93 -0.32 1.09 16 30 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 1.48 6.14 -52.49 -0.32 1.16 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 2.31 6.15 -52.49 -0.32 1.99 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -31.11 316.71 -7.73 -38.85 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.07 Total: 9.38 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.30 Total: -3.49 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.30 Total: -47.31 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.11 -7.73 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343043821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.399 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds