Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46746 * 2 1 4 4 C 1.46505 * 119.99738 * 269.99955 * 3 2 1 5 5 C 1.50692 * 109.47050 * 270.00024 * 4 3 2 6 6 O 1.21293 * 120.00482 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99754 * 180.02562 * 5 4 3 8 8 C 1.37105 * 119.99931 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99838 * 0.02562 * 8 7 5 10 10 C 1.38949 * 119.99693 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00253 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99597 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47050 * 60.00441 * 12 10 8 14 14 H 1.48497 * 109.46841 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47302 * 300.00054 * 12 10 8 16 16 C 1.39668 * 119.99761 * 90.00388 * 3 2 1 17 17 C 1.38940 * 120.06905 * 359.97431 * 16 3 2 18 18 C 1.38093 * 119.94924 * 180.02562 * 17 16 3 19 19 C 1.38288 * 120.08810 * 359.97438 * 18 17 16 20 20 C 1.38387 * 120.13771 * 0.04117 * 19 18 17 21 21 Cl 1.73596 * 119.97635 * 180.02562 * 20 19 18 22 22 C 1.38245 * 120.04856 * 359.96022 * 20 19 18 23 23 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46954 * 299.99732 * 1 2 3 25 25 H 1.09000 * 109.47688 * 60.00247 * 1 2 3 26 26 H 1.09000 * 109.46954 * 240.00268 * 2 1 3 27 27 H 1.09000 * 109.47688 * 119.99753 * 2 1 3 28 28 H 1.09000 * 109.47103 * 30.00664 * 4 3 2 29 29 H 1.09005 * 109.46706 * 150.00136 * 4 3 2 30 30 H 0.96995 * 120.00118 * 0.02562 * 7 5 4 31 31 H 0.97004 * 119.99851 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.02748 * 0.02562 * 17 16 3 33 33 H 1.08001 * 119.95540 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.92927 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.04656 * 180.29874 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8352 -1.7038 6 8 4.4234 1.1560 -1.0215 7 7 4.1387 2.3782 -2.8511 8 6 5.4337 2.1632 -3.2467 9 1 6.0906 1.5585 -2.6391 10 6 5.9007 2.7226 -4.4298 11 7 5.1012 3.4580 -5.1693 12 14 7.6650 2.4291 -4.9691 13 1 7.8925 0.9724 -5.1467 14 1 7.9121 3.1286 -6.2554 15 1 8.5924 2.9525 -3.9343 16 6 2.2510 2.0397 1.2096 17 6 2.0196 1.3862 2.4137 18 6 2.2501 2.0396 3.6082 19 6 2.7114 3.3432 3.6074 20 6 2.9429 3.9977 2.4103 21 17 3.5227 5.6340 2.4143 22 6 2.7140 3.3490 1.2112 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5815 1.6878 -2.0284 29 1 2.0953 3.1412 -1.1384 30 1 3.5488 2.9216 -3.3966 31 1 5.4271 3.8482 -5.9955 32 1 1.6596 0.3679 2.4154 33 1 2.0698 1.5319 4.5442 34 1 2.8912 3.8517 4.5431 35 1 2.8993 3.8581 0.2770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343043821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = -29.762066 kcal Electronic energy + Delta-G solvation = -19654.097717 eV Core-core repulsion = 16484.182903 eV Total energy + Delta-G solvation = -3169.914814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97302 -39.76371 -37.82112 -36.88285 -35.89693 -33.35212 -32.74356 -31.39205 -30.78942 -28.09786 -26.32146 -24.31847 -23.26168 -22.00146 -20.86097 -19.92376 -18.76460 -17.90674 -17.04343 -16.68662 -16.43456 -16.15293 -15.73458 -15.46229 -15.26082 -14.84276 -14.55774 -14.26745 -14.24090 -13.66569 -13.52496 -13.08594 -12.92093 -12.74355 -12.59024 -12.50671 -12.46129 -12.15753 -12.11169 -11.91671 -11.67717 -11.52719 -11.02951 -10.29267 -10.03715 -9.70846 -8.50795 -8.24503 -5.97446 0.31761 0.60334 1.18208 1.36781 1.39307 1.49816 2.00873 2.07055 2.30582 2.83389 3.17549 3.28414 3.88452 3.95367 4.15546 4.25082 4.29887 4.34411 4.42546 4.48396 4.53726 4.59076 4.71275 4.80986 4.96605 5.03424 5.25124 5.37974 5.39378 5.40382 5.53715 5.80321 5.93993 6.24595 6.52111 6.58243 7.10404 7.53045 8.08362 8.68083 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.005128 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.490799 B = 5459.122281 C = 6682.003124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.602 5.602 4 C 0.120 3.880 5 C 0.418 3.582 6 O -0.623 6.623 7 N -0.570 5.570 8 C -0.334 4.334 9 H 0.075 0.925 10 C -0.009 4.009 11 N -0.918 5.918 12 Si 0.989 3.011 13 H -0.271 1.271 14 H -0.269 1.269 15 H -0.275 1.275 16 C 0.228 3.772 17 C -0.198 4.198 18 C -0.054 4.054 19 C -0.182 4.182 20 C 0.003 3.997 21 Cl -0.082 7.082 22 C -0.214 4.214 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.397 0.603 31 H 0.278 0.722 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 -2.014 12.961 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.004 4.004 3 N -0.309 5.309 4 C -0.008 4.008 5 C 0.204 3.796 6 O -0.510 6.510 7 N -0.208 5.208 8 C -0.463 4.463 9 H 0.093 0.907 10 C -0.210 4.210 11 N -0.558 5.558 12 Si 0.813 3.187 13 H -0.196 1.196 14 H -0.193 1.193 15 H -0.200 1.200 16 C 0.125 3.875 17 C -0.221 4.221 18 C -0.073 4.073 19 C -0.202 4.202 20 C -0.024 4.024 21 Cl -0.053 7.053 22 C -0.237 4.237 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.771 -2.328 13.038 17.071 hybrid contribution 1.002 0.584 -1.098 1.597 sum -9.769 -1.744 11.940 15.525 Atomic orbital electron populations 1.22137 0.93843 1.03160 1.02482 1.21534 0.95211 0.80851 1.02816 1.46245 1.69336 1.13904 1.01456 1.21163 0.92443 0.99689 0.87470 1.21627 0.91738 0.83824 0.82381 1.90497 1.59970 1.44406 1.56128 1.41955 1.12146 1.46019 1.20641 1.19570 0.89143 1.31434 1.06197 0.90684 1.25987 1.03710 0.95691 0.95569 1.69655 1.37752 1.33413 1.14997 0.85045 0.77314 0.78611 0.77717 1.19630 1.19289 1.20037 1.17866 0.92186 0.90429 0.87022 1.21044 1.08916 1.01647 0.90452 1.21199 0.94579 0.93012 0.98499 1.21031 1.06458 0.96445 0.96277 1.20762 1.00505 0.86063 0.95095 1.98344 1.87419 1.20552 1.98991 1.20522 1.10206 0.95544 0.97424 0.89759 0.92049 0.92578 0.92052 0.90131 0.86268 0.87948 0.76933 0.91236 0.83608 0.81721 0.83603 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 71.98 0.74 -2.12 16 2 C 0.12 2.99 5.88 86.38 0.51 3.50 16 3 N -0.60 -18.88 2.10 -701.62 -1.47 -20.35 16 4 C 0.12 4.09 5.64 85.63 0.48 4.57 16 5 C 0.42 19.74 7.85 87.65 0.69 20.43 16 6 O -0.62 -34.65 16.01 -3.07 -0.05 -34.70 16 7 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 8 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 9 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 10 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 11 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 12 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 C 0.23 7.23 6.55 38.21 0.25 7.48 16 17 C -0.20 -5.02 9.21 22.40 0.21 -4.82 16 18 C -0.05 -1.18 10.04 22.25 0.22 -0.96 16 19 C -0.18 -4.48 9.83 22.32 0.22 -4.26 16 20 C 0.00 0.09 6.32 22.31 0.14 0.23 16 21 Cl -0.08 -2.39 28.95 -2.72 -0.08 -2.47 16 22 C -0.21 -7.28 8.99 22.42 0.20 -7.07 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.72 8.07 -2.39 -0.02 1.70 16 27 H 0.08 1.90 6.20 -2.39 -0.01 1.89 16 28 H 0.12 3.36 8.07 -2.39 -0.02 3.35 16 29 H 0.10 3.25 6.20 -2.38 -0.01 3.24 16 30 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.15 3.00 6.14 -2.91 -0.02 2.99 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.11 4.10 6.15 -2.91 -0.02 4.08 16 Total: -1.00 -68.59 316.71 4.42 -64.18 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.39 Total: 29.30 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.94 Total: -1.31 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -2.81 Total: -100.33 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.05 Total: -34.70 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.47 kcal Total: -68.59 4.42 -64.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343043821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.416 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds