Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.46891 * 2 1 4 4 C 1.38286 * 119.93946 * 265.01813 * 3 2 1 5 5 C 1.38094 * 120.08511 * 179.97438 * 4 3 2 6 6 C 1.38896 * 119.95805 * 0.02584 * 5 4 3 7 7 N 1.39946 * 120.06820 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99567 * 33.27893 * 7 6 5 9 9 O 1.21586 * 120.00017 * 5.31319 * 8 7 6 10 10 N 1.34778 * 119.99682 * 185.32142 * 8 7 6 11 11 C 1.46496 * 119.99926 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47302 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99555 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99984 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99830 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00112 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46943 * 90.00222 * 16 14 12 18 18 H 1.48499 * 109.47259 * 210.00030 * 16 14 12 19 19 H 1.48497 * 109.47163 * 330.00377 * 16 14 12 20 20 C 1.38834 * 119.87243 * 359.70321 * 6 5 4 21 21 C 1.38254 * 119.91050 * 0.54762 * 20 6 5 22 22 Cl 1.73600 * 119.97075 * 179.74928 * 21 20 6 23 23 H 1.08995 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47161 * 299.99920 * 1 2 3 25 25 H 1.09002 * 109.46818 * 59.99907 * 1 2 3 26 26 H 1.09001 * 109.46717 * 240.00137 * 2 1 3 27 27 H 1.09002 * 109.46818 * 120.00093 * 2 1 3 28 28 H 1.08001 * 119.95651 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.02444 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99819 * 213.28205 * 7 6 5 31 31 H 0.97004 * 119.99752 * 359.97438 * 10 8 7 32 32 H 1.09007 * 109.47137 * 299.99633 * 11 10 8 33 33 H 1.09004 * 109.47447 * 59.99108 * 11 10 8 34 34 H 0.96999 * 119.99698 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.04144 * 180.29436 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3604 2.0368 -1.1938 5 6 2.8205 3.3388 -1.1973 6 6 2.9543 4.0304 -0.0003 7 7 3.4208 5.3499 -0.0011 8 6 3.1235 6.1690 -1.0293 9 8 2.3714 5.7936 -1.9078 10 7 3.6601 7.4042 -1.0837 11 6 3.3365 8.2948 -2.2010 12 6 4.0593 9.6053 -2.0244 13 1 4.6957 9.7594 -1.1655 14 6 3.9082 10.6073 -2.9593 15 7 4.5394 11.7508 -2.8054 16 14 2.8080 10.3403 -4.4451 17 1 1.4252 10.7743 -4.1215 18 1 3.3209 11.1349 -5.5900 19 1 2.8032 8.8996 -4.8050 20 6 2.6190 3.4122 1.1967 21 6 2.1639 2.1067 1.1946 22 17 1.7504 1.3300 2.6910 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2560 1.4992 -2.1246 29 1 3.0761 3.8191 -2.1303 30 1 3.9581 5.6748 0.7382 31 1 4.2599 7.7037 -0.3826 32 1 3.6477 7.8311 -3.1371 33 1 2.2614 8.4733 -2.2238 34 1 4.4328 12.4559 -3.4629 35 1 2.7175 3.9490 2.1286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352652398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -21.985372 kcal Electronic energy + Delta-G solvation = -18939.243194 eV Core-core repulsion = 15769.665603 eV Total energy + Delta-G solvation = -3169.577591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47833 -38.92331 -36.61639 -35.38481 -34.36120 -33.13338 -32.30996 -30.83435 -28.93758 -27.48966 -24.05984 -23.09666 -22.31315 -21.11620 -20.39522 -18.50628 -17.78192 -16.50682 -15.90060 -15.83007 -15.11000 -14.95075 -14.33005 -14.21792 -14.04428 -13.85780 -13.61265 -13.25537 -12.92081 -12.55382 -12.42548 -12.23081 -11.82068 -11.66903 -11.49011 -11.05955 -11.01392 -10.86347 -10.82226 -10.11651 -10.02516 -9.72479 -9.53746 -8.88301 -8.83608 -8.36861 -7.91315 -6.26089 -4.29060 1.13008 1.16718 1.96944 2.97531 3.24069 3.31582 3.34773 3.38888 3.77578 4.29206 4.57594 4.61639 4.71599 4.93956 5.09316 5.15148 5.19603 5.30059 5.36341 5.52237 5.61072 5.72396 5.78945 6.04197 6.09211 6.21338 6.35665 6.46479 6.62655 6.93640 7.01006 7.07921 7.22296 7.39650 8.17383 8.49277 8.71524 8.94470 9.33357 10.85748 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.003204 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.892768 B = 8735.821378 C = 9257.716406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.100 4.100 4 C -0.086 4.086 5 C -0.114 4.114 6 C 0.191 3.809 7 N -0.693 5.693 8 C 0.693 3.307 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.237 3.763 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.146 4.146 21 C -0.013 4.013 22 Cl -0.073 7.073 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.407 0.593 31 H 0.395 0.605 32 H 0.026 0.974 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -22.032 8.526 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.104 4.104 5 C -0.134 4.134 6 C 0.094 3.906 7 N -0.340 5.340 8 C 0.393 3.607 9 O -0.461 6.461 10 N -0.365 5.365 11 C 0.115 3.885 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.168 4.168 21 C -0.040 4.040 22 Cl -0.044 7.044 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.242 0.758 31 H 0.229 0.771 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.423 -22.096 7.698 23.813 hybrid contribution 0.010 0.486 0.137 0.506 sum -4.414 -21.610 7.835 23.406 Atomic orbital electron populations 1.21737 0.94594 1.01635 1.02469 1.20522 0.96408 0.92018 1.03081 1.19662 1.02066 0.97082 0.91416 1.20867 0.98254 0.94326 0.96999 1.21381 0.99986 0.93545 0.98516 1.17314 0.96364 0.83566 0.93345 1.42773 1.56464 1.09969 1.24823 1.16105 0.81248 0.81382 0.81957 1.90893 1.40008 1.75651 1.39596 1.45463 1.49434 1.12771 1.28831 1.19446 0.96341 0.88424 0.84304 1.21058 1.29938 0.96445 1.10905 0.90216 1.24776 0.95277 0.94622 0.97874 1.69876 1.42034 1.04736 1.36178 0.86812 0.81077 0.79361 0.82415 1.19796 1.20849 1.18436 1.20646 1.03829 0.94317 0.97979 1.20357 1.03746 0.93301 0.86615 1.98344 1.92201 1.80916 1.32923 0.92445 0.92377 0.92467 0.90863 0.90664 0.84980 0.83767 0.75809 0.77111 0.95588 0.96080 0.92173 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.72 5.57 -27.88 -0.16 -0.88 16 3 C -0.10 -1.11 5.14 -104.56 -0.54 -1.64 16 4 C -0.09 -1.01 9.67 -39.62 -0.38 -1.39 16 5 C -0.11 -1.62 8.65 -39.39 -0.34 -1.97 16 6 C 0.19 2.65 6.28 -83.69 -0.53 2.12 16 7 N -0.69 -9.77 5.35 -14.22 -0.08 -9.85 16 8 C 0.69 12.96 8.30 -86.91 -0.72 12.24 16 9 O -0.58 -12.93 14.03 5.29 0.07 -12.86 16 10 N -0.71 -13.92 5.55 -66.41 -0.37 -14.28 16 11 C 0.24 5.67 4.50 -5.20 -0.02 5.65 16 12 C -0.55 -14.62 9.83 -34.44 -0.34 -14.96 16 13 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 16 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 20 C -0.15 -1.74 9.75 -39.36 -0.38 -2.12 16 21 C -0.01 -0.15 6.31 -39.52 -0.25 -0.40 16 22 Cl -0.07 -0.73 27.14 -51.86 -1.41 -2.14 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 27 H 0.07 0.63 7.12 -51.93 -0.37 0.26 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.14 2.34 6.41 -52.49 -0.34 2.00 16 30 H 0.41 4.34 8.83 -40.82 -0.36 3.97 16 31 H 0.40 6.65 8.34 -40.82 -0.34 6.31 16 32 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 33 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -31.13 313.57 -8.61 -39.74 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.27 Total: 5.70 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.39 Total: -2.12 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.33 Total: -49.44 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.14 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.13 -8.61 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352652398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.751 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds