Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50698 * 109.47518 * 174.42146 * 3 2 1 6 6 H 1.07998 * 119.99791 * 114.19155 * 5 3 2 7 7 C 1.37876 * 120.00110 * 294.20509 * 5 3 2 8 8 N 1.31513 * 120.00151 * 159.34408 * 7 5 3 9 9 Si 1.86808 * 119.99880 * 339.33554 * 7 5 3 10 10 H 1.48499 * 109.47110 * 270.00487 * 9 7 5 11 11 H 1.48496 * 109.46937 * 30.00855 * 9 7 5 12 12 H 1.48503 * 109.46837 * 150.00358 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00152 * 180.02562 * 14 13 3 17 17 C 1.50702 * 109.47373 * 179.97438 * 16 14 13 18 18 C 1.38229 * 119.60540 * 124.72019 * 17 16 14 19 19 C 1.38613 * 119.17148 * 179.79515 * 18 17 16 20 20 C 1.38773 * 118.41343 * 0.47072 * 19 18 17 21 21 Cl 1.73596 * 120.43631 * 179.77194 * 20 19 18 22 22 C 1.38308 * 119.13573 * 359.75157 * 20 19 18 23 23 N 1.31853 * 119.59938 * 304.99333 * 17 16 14 24 24 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97000 * 120.00114 * 354.92906 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.09007 * 109.46870 * 299.99494 * 16 14 13 32 32 H 1.08996 * 109.47603 * 59.99116 * 16 14 13 33 33 H 1.07993 * 120.41525 * 359.97438 * 18 17 16 34 34 H 1.08007 * 120.78958 * 180.19935 * 19 18 17 35 35 H 1.08004 * 119.63020 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4448 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9232 2.8820 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6800 17 6 -1.3374 3.8768 -2.5637 18 6 -1.5699 5.2153 -2.8190 19 6 -2.8609 5.7089 -2.7136 20 6 -3.8737 4.8353 -2.3436 21 17 -5.5085 5.3987 -2.1899 22 6 -3.5638 3.5097 -2.0994 23 7 -2.3240 3.0749 -2.2144 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8788 0.5739 0.4635 30 1 2.2909 2.1165 -1.9977 31 1 0.7551 4.1435 -2.8892 32 1 0.1004 2.6015 -3.4908 33 1 -0.7565 5.8677 -3.1000 34 1 -3.0727 6.7496 -2.9103 35 1 -4.3457 2.8229 -1.8106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354685699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -18.174546 kcal Electronic energy + Delta-G solvation = -19571.974731 eV Core-core repulsion = 16402.562389 eV Total energy + Delta-G solvation = -3169.412342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54461 -38.92441 -36.85738 -35.24280 -32.89233 -32.60431 -32.36187 -31.30455 -28.36680 -26.82982 -23.93024 -22.86698 -22.19521 -20.47138 -19.46167 -17.85280 -17.24939 -16.88169 -16.14523 -15.98408 -15.32771 -14.71589 -14.35917 -13.91873 -13.59762 -13.34821 -13.10633 -12.76961 -12.54053 -12.40545 -12.17745 -12.09889 -11.76748 -11.48890 -11.36009 -10.75720 -10.65620 -10.42267 -10.01089 -9.83586 -9.67743 -9.59409 -9.20968 -9.07706 -8.87437 -8.30742 -8.01795 -6.58064 -4.20544 0.75268 1.03359 1.81439 3.29739 3.42091 3.46359 3.48002 3.62382 4.03736 4.15912 4.44907 4.50096 4.53742 4.76671 4.99606 5.14072 5.33499 5.41601 5.44463 5.53876 5.74283 5.83006 6.14980 6.17052 6.32538 6.36590 6.77023 6.86217 7.02583 7.13667 7.41626 7.46281 7.69916 7.83043 8.25056 8.52046 8.72604 9.04133 9.46429 10.80459 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.003732 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.880590 B = 7500.743041 C = 7744.858670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.622 4.622 6 H 0.062 0.938 7 C 0.044 3.956 8 N -0.895 5.895 9 Si 1.033 2.967 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.533 6.533 16 C -0.100 4.100 17 C 0.158 3.842 18 C -0.157 4.157 19 C -0.067 4.067 20 C -0.098 4.098 21 Cl -0.063 7.063 22 C 0.121 3.879 23 N -0.436 5.436 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 8.809 -10.958 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.146 3.854 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.527 5.527 9 Si 0.860 3.140 10 H -0.211 1.211 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.410 6.410 16 C -0.140 4.140 17 C 0.020 3.980 18 C -0.177 4.177 19 C -0.094 4.094 20 C -0.127 4.127 21 Cl -0.035 7.035 22 C -0.038 4.038 23 N -0.144 5.144 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.214 7.592 -8.470 19.806 hybrid contribution -0.024 1.352 -2.177 2.562 sum -16.238 8.944 -10.647 21.379 Atomic orbital electron populations 1.21881 0.97124 0.98748 1.02293 1.22193 0.93909 0.99679 1.00907 1.19075 0.95573 0.88540 0.82174 0.94002 1.22061 0.89832 1.49346 1.04690 0.92036 1.25629 0.96841 0.91993 1.01834 1.70834 1.10552 1.40285 1.31035 0.84192 0.76496 0.77363 0.75932 1.21051 1.19278 1.20996 1.46230 1.14490 1.56395 1.18182 1.19976 0.82720 0.79604 0.88673 1.90702 1.50357 1.59118 1.40827 1.20728 0.91826 1.02243 0.99234 1.20801 0.94559 0.90003 0.92616 1.21973 0.97201 0.96159 1.02345 1.21447 0.91562 1.00039 0.96324 1.22111 0.87151 0.96108 1.07287 1.98369 1.19283 1.89393 1.96444 1.22801 0.94156 0.91862 0.94939 1.67659 0.98889 1.38152 1.09725 0.95348 0.93151 0.92725 0.93285 0.92387 0.91978 0.77605 0.87520 0.87212 0.83826 0.83888 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.67 16 2 C -0.13 -2.88 5.03 -26.73 -0.13 -3.01 16 3 C 0.25 5.90 1.78 -69.08 -0.12 5.78 16 4 H 0.04 1.09 5.99 -51.93 -0.31 0.78 16 5 C -0.62 -16.58 8.97 -34.44 -0.31 -16.88 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.24 5.25 -17.82 -0.09 1.14 16 8 N -0.89 -26.46 13.70 55.43 0.76 -25.70 16 9 Si 1.03 25.12 26.33 -169.99 -4.48 20.65 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.25 5.88 56.52 0.33 -5.92 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.70 -13.65 5.03 -54.93 -0.28 -13.93 16 14 C 0.51 9.19 6.36 -10.99 -0.07 9.12 16 15 O -0.53 -11.61 12.47 5.55 0.07 -11.54 16 16 C -0.10 -1.26 6.10 -29.04 -0.18 -1.44 16 17 C 0.16 2.12 5.76 -82.59 -0.48 1.65 16 18 C -0.16 -1.65 9.71 -39.45 -0.38 -2.04 16 19 C -0.07 -0.67 9.98 -39.25 -0.39 -1.06 16 20 C -0.10 -1.08 6.34 -39.36 -0.25 -1.33 16 21 Cl -0.06 -0.61 28.99 -51.86 -1.50 -2.12 16 22 C 0.12 1.54 10.99 -17.51 -0.19 1.35 16 23 N -0.44 -6.60 9.22 -9.44 -0.09 -6.69 16 24 H 0.03 0.52 8.14 -51.94 -0.42 0.10 16 25 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 26 H 0.05 1.14 5.63 -51.93 -0.29 0.84 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.36 5.64 -51.93 -0.29 1.06 16 29 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 30 H 0.39 6.62 8.53 -40.82 -0.35 6.27 16 31 H 0.11 1.02 7.87 -51.92 -0.41 0.61 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.14 1.09 7.95 -52.49 -0.42 0.67 16 34 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -32.23 307.36 -7.40 -39.63 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.23 Total: 4.46 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.28 Total: -9.40 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.40 Total: -46.32 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.54 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.48 Total: 20.65 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.23 -7.40 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354685699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.453 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds