Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76202 * 102.99723 * 2 1 4 4 C 1.38996 * 120.08351 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.91872 * 180.02562 * 4 3 2 6 6 C 1.38325 * 120.08026 * 0.02562 * 5 4 3 7 7 C 1.38275 * 120.16328 * 0.02562 * 6 5 4 8 8 C 1.38107 * 120.08176 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.04347 * 180.02562 * 8 7 6 10 10 S 1.81406 * 109.47288 * 89.99806 * 9 8 7 11 11 C 1.81400 * 103.00165 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47254 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47129 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47207 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99710 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99935 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00054 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47238 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47374 * 119.99860 * 18 16 14 21 21 H 1.48500 * 109.47174 * 239.99652 * 18 16 14 22 22 H 1.09007 * 109.47352 * 60.00057 * 1 2 3 23 23 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47248 * 299.99957 * 1 2 3 25 25 H 1.08002 * 120.03911 * 0.04043 * 4 3 2 26 26 H 1.08001 * 119.95630 * 180.29522 * 5 4 3 27 27 H 1.08003 * 119.91252 * 179.97438 * 6 5 4 28 28 H 1.07997 * 119.96281 * 180.02562 * 7 6 5 29 29 H 1.09005 * 109.47342 * 209.99889 * 9 8 7 30 30 H 1.09001 * 109.47268 * 329.99699 * 9 8 7 31 31 H 1.09007 * 109.46874 * 300.00037 * 11 10 9 32 32 H 1.09000 * 109.47361 * 59.99592 * 11 10 9 33 33 H 1.09002 * 109.46585 * 299.99494 * 12 11 10 34 34 H 1.08995 * 109.47073 * 59.99611 * 12 11 10 35 35 H 1.09001 * 109.47576 * 300.00115 * 13 12 11 36 36 H 1.09008 * 109.47278 * 59.99794 * 13 12 11 37 37 H 0.97008 * 119.99698 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6663 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8328 4.4131 -0.0016 7 6 3.8454 3.4715 -0.0021 8 6 3.5386 2.1250 -0.0016 9 6 4.6429 1.0996 -0.0016 10 16 5.0866 0.6887 1.7087 11 6 6.4078 -0.5373 1.5042 12 6 6.8984 -0.9928 2.8800 13 6 8.0123 -2.0273 2.7076 14 6 8.4959 -2.4754 4.0627 15 1 8.0528 -2.0638 4.9574 16 6 9.5041 -3.4107 4.1602 17 7 10.0441 -3.9116 3.0706 18 14 10.1031 -3.9667 5.8400 19 1 9.3392 -3.2573 6.8976 20 1 9.8986 -5.4310 5.9787 21 1 11.5480 -3.6534 5.9789 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.1616 2.3527 -0.0003 26 1 0.7211 4.7488 0.0033 27 1 3.0757 5.4655 -0.0024 28 1 4.8776 3.7894 -0.0021 29 1 4.3034 0.1999 -0.5151 30 1 5.5145 1.5043 -0.5159 31 1 6.0245 -1.3961 0.9530 32 1 7.2352 -0.0913 0.9524 33 1 7.2816 -0.1342 3.4316 34 1 6.0708 -1.4389 3.4314 35 1 7.6288 -2.8857 2.1561 36 1 8.8401 -1.5814 2.1559 37 1 10.7532 -4.5700 3.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358334964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -1.202574 kcal Electronic energy + Delta-G solvation = -16400.741738 eV Core-core repulsion = 13780.402277 eV Total energy + Delta-G solvation = -2620.339461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.37874 -34.40748 -33.15137 -31.98517 -31.51576 -29.07556 -27.65519 -27.01944 -23.38321 -23.05407 -21.75281 -20.17007 -17.80478 -16.52435 -16.20504 -15.79228 -15.61641 -14.83810 -14.55878 -14.52927 -14.30994 -14.19416 -13.77258 -13.32994 -13.00107 -12.68031 -12.64742 -12.45361 -11.96247 -11.67385 -11.55909 -11.32467 -10.87369 -10.86580 -10.50489 -10.29058 -9.96588 -9.79908 -9.75093 -9.26554 -9.08879 -8.89471 -8.34626 -7.59473 -7.27066 -5.99501 -4.01678 0.86111 1.05633 1.34121 2.11841 2.23936 2.94421 3.32720 3.40051 3.45125 3.55245 4.46471 4.47638 4.54505 4.74767 4.77708 4.80499 4.99813 5.16052 5.24775 5.36557 5.37645 5.40473 5.57175 5.59821 5.69989 5.77332 5.99848 6.18881 6.20302 6.28289 6.60624 6.65916 6.76871 7.06361 7.66897 7.79262 7.99995 8.42144 9.05117 9.62446 11.11921 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.002976 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.311295 B = 9406.262263 C = 9921.935356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.089 6.089 3 C -0.072 4.072 4 C -0.137 4.137 5 C -0.101 4.101 6 C -0.126 4.126 7 C -0.085 4.085 8 C -0.048 4.048 9 C -0.055 4.055 10 S -0.257 6.257 11 C -0.076 4.076 12 C -0.094 4.094 13 C 0.027 3.973 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.413 14.459 -10.091 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.154 5.846 3 C -0.187 4.187 4 C -0.161 4.161 5 C -0.121 4.121 6 C -0.147 4.147 7 C -0.106 4.106 8 C -0.055 4.055 9 C -0.203 4.203 10 S -0.027 6.027 11 C -0.224 4.224 12 C -0.133 4.133 13 C -0.012 4.012 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.100 0.900 23 H 0.126 0.874 24 H 0.102 0.898 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.067 13.616 -9.210 25.175 hybrid contribution 0.057 0.267 -0.291 0.399 sum -19.010 13.883 -9.501 25.385 Atomic orbital electron populations 1.23750 0.96157 1.07101 1.05358 1.85897 1.04894 1.02203 1.91586 1.21675 0.95792 0.97148 1.04061 1.21106 0.97990 0.93202 1.03754 1.21035 0.96678 0.95193 0.99203 1.21141 0.92660 0.99588 1.01274 1.21025 0.99926 0.91529 0.98109 1.18891 0.91258 0.93890 1.01499 1.22237 0.99316 1.00376 0.98358 1.87072 1.49719 1.56571 1.09332 1.23652 0.96700 0.97956 1.04095 1.21452 0.99977 1.00157 0.91708 1.19109 0.91959 0.92738 0.97363 1.21268 1.18671 1.23112 0.92651 0.92491 1.25024 0.96508 0.96343 0.96621 1.69980 1.26386 1.29792 1.27411 0.86521 0.78565 0.78441 0.84411 1.19663 1.21001 1.21014 0.90042 0.87379 0.89765 0.85853 0.85801 0.85651 0.85185 0.89028 0.89097 0.90534 0.90638 0.92450 0.92359 0.96413 0.96456 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.15 101.05 0.92 -0.22 16 2 S -0.09 -1.03 20.77 -107.50 -2.23 -3.26 16 3 C -0.07 -0.86 6.11 -39.03 -0.24 -1.09 16 4 C -0.14 -1.35 9.36 -39.37 -0.37 -1.72 16 5 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 6 C -0.13 -1.16 10.04 -39.54 -0.40 -1.56 16 7 C -0.08 -0.91 9.70 -39.62 -0.38 -1.30 16 8 C -0.05 -0.60 5.16 -104.41 -0.54 -1.14 16 9 C -0.06 -0.73 5.63 36.00 0.20 -0.53 16 10 S -0.26 -4.21 21.72 -107.50 -2.33 -6.54 16 11 C -0.08 -1.36 5.94 37.16 0.22 -1.14 16 12 C -0.09 -2.01 5.16 -26.73 -0.14 -2.15 16 13 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.08 0.50 7.75 -51.92 -0.40 0.10 16 23 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.08 0.57 7.75 -51.92 -0.40 0.17 16 25 H 0.12 0.96 5.88 -52.49 -0.31 0.65 16 26 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.09 1.22 6.79 -51.92 -0.35 0.87 16 30 H 0.09 1.08 8.09 -51.92 -0.42 0.66 16 31 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 32 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -31.43 335.94 -11.11 -42.53 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.65 Total: -3.01 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.66 Total: -25.28 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -4.57 Total: -9.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.43 -11.11 -42.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358334964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.332 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds