Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76205 * 103.00250 * 2 1 4 4 C 1.38976 * 120.08050 * 180.02562 * 3 2 1 5 5 C 1.38080 * 119.91900 * 180.02562 * 4 3 2 6 6 C 1.38308 * 120.07987 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91986 * 180.02562 * 6 5 4 8 8 S 1.81396 * 109.47105 * 90.00280 * 7 6 5 9 9 C 1.81396 * 102.99849 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47134 * 304.99769 * 9 8 7 11 11 C 1.52997 * 109.47360 * 64.99961 * 9 8 7 12 12 C 1.52999 * 109.47051 * 185.00302 * 9 8 7 13 13 C 1.50695 * 109.47581 * 64.99784 * 12 9 8 14 14 H 1.08002 * 119.99958 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00273 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99634 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47031 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46648 * 120.00199 * 17 15 13 20 20 H 1.48500 * 109.47111 * 240.00198 * 17 15 13 21 21 C 1.38302 * 120.15864 * 0.27961 * 6 5 4 22 22 C 1.38086 * 120.08253 * 359.44675 * 21 6 5 23 23 H 1.08996 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47061 * 300.00382 * 1 2 3 25 25 H 1.09007 * 109.47088 * 60.00271 * 1 2 3 26 26 H 1.07998 * 120.03897 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.96190 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46870 * 329.99836 * 7 6 5 29 29 H 1.09003 * 109.46463 * 210.00339 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99820 * 11 9 8 31 31 H 1.09001 * 109.46832 * 300.00011 * 11 9 8 32 32 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47565 * 185.00262 * 12 9 8 34 34 H 1.09000 * 109.46738 * 304.99743 * 12 9 8 35 35 H 0.97001 * 119.99767 * 179.97438 * 16 15 13 36 36 H 1.08000 * 119.96257 * 179.72473 * 21 6 5 37 37 H 1.07996 * 120.04003 * 180.27180 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8457 3.4713 0.0000 6 6 2.8329 4.4131 0.0005 7 6 3.1719 5.8815 0.0005 8 16 3.3071 6.4709 -1.7097 9 6 3.7135 8.2268 -1.5052 10 1 2.9601 8.7035 -0.8780 11 6 5.0863 8.3589 -0.8428 12 6 3.7408 8.9069 -2.8755 13 6 2.3584 8.8848 -3.4750 14 1 1.5420 8.4307 -2.9330 15 6 2.1360 9.4434 -4.7158 16 7 3.1305 9.9950 -5.3763 17 14 0.4224 9.4153 -5.4592 18 1 -0.5124 8.7413 -4.5228 19 1 -0.0358 10.8073 -5.6992 20 1 0.4534 8.6755 -6.7465 21 6 1.5097 4.0106 0.0064 22 6 1.1953 2.6661 0.0001 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 4.3302 1.3901 -0.0005 27 1 4.8778 3.7892 0.0000 28 1 4.1210 6.0352 0.5140 29 1 2.3867 6.4356 0.5149 30 1 5.8397 7.8823 -1.4700 31 1 5.0667 7.8744 0.1334 32 1 5.3307 9.4141 -0.7204 33 1 4.0712 9.9394 -2.7622 34 1 4.4298 8.3749 -3.5314 35 1 2.9741 10.3876 -6.2494 36 1 0.7214 4.7488 0.0113 37 1 0.1618 2.3525 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358538347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = 1.553512 kcal Electronic energy + Delta-G solvation = -16724.340099 eV Core-core repulsion = 14104.120151 eV Total energy + Delta-G solvation = -2620.219948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20888 -34.52401 -32.94535 -32.01175 -31.26355 -29.19340 -27.70414 -26.79925 -23.28975 -22.69763 -21.82475 -20.37141 -17.85238 -16.34186 -16.07819 -15.61608 -15.33321 -14.78422 -14.61240 -14.44719 -14.05319 -14.04264 -13.51198 -13.12367 -12.98948 -12.74978 -12.61104 -12.22781 -11.86000 -11.62376 -11.54880 -11.17986 -10.97962 -10.74969 -10.49144 -10.47058 -10.41786 -9.60616 -9.36260 -9.18277 -9.03044 -8.95350 -8.34242 -7.48694 -6.89071 -5.99365 -3.99821 0.99801 1.33184 1.33934 2.19982 2.43642 3.32973 3.35903 3.40920 3.46113 3.75948 4.48546 4.69761 4.74903 4.77434 4.81397 4.84878 5.18874 5.31145 5.36207 5.38267 5.54641 5.57664 5.66971 5.74892 5.81797 5.96915 5.98002 6.17504 6.23965 6.35536 6.57355 6.60576 6.72695 6.83383 7.53462 7.64811 7.98586 8.37129 9.05115 9.63483 11.12257 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.003729 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.813320 B = 7506.314074 C = 8543.308733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.128 6.128 3 C -0.088 4.088 4 C -0.099 4.099 5 C -0.087 4.087 6 C -0.058 4.058 7 C -0.070 4.070 8 S -0.220 6.220 9 C -0.047 4.047 10 H 0.073 0.927 11 C -0.144 4.144 12 C 0.039 3.961 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.084 4.084 22 C -0.131 4.131 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 -16.137 13.954 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.113 5.887 3 C -0.201 4.201 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.061 4.061 7 C -0.218 4.218 8 S 0.010 5.990 9 C -0.175 4.175 10 H 0.091 0.909 11 C -0.204 4.204 12 C 0.001 3.999 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.105 4.105 22 C -0.155 4.155 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.265 -17.641 12.841 21.856 hybrid contribution -1.618 1.925 0.530 2.570 sum -2.883 -15.716 13.371 20.835 Atomic orbital electron populations 1.23653 0.94761 1.06936 1.05802 1.85380 1.06509 1.03820 1.92961 1.21643 0.96773 0.95995 1.05686 1.20677 0.94133 0.95956 1.01438 1.20970 0.99332 0.91897 0.98621 1.19371 0.93435 0.93752 0.99560 1.22367 1.04306 0.94639 1.00444 1.87484 1.93596 1.11871 1.06014 1.23416 0.97708 0.92302 1.04121 0.90861 1.22115 0.97379 1.01632 0.99240 1.19014 0.98313 0.95005 0.87527 1.21283 0.94580 1.36635 1.02533 0.91833 1.24992 0.96876 0.95408 0.97131 1.69969 1.30945 1.38970 1.13828 0.86535 0.84783 0.77511 0.79238 1.19614 1.21161 1.21032 1.20964 0.96096 0.95286 0.98205 1.21087 0.98047 0.93013 1.03334 0.87544 0.89773 0.89607 0.85527 0.85254 0.89935 0.89882 0.91925 0.94070 0.92225 0.95013 0.95576 0.93082 0.85362 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.15 101.05 0.92 -0.10 16 2 S -0.13 -1.32 22.56 -107.50 -2.43 -3.74 16 3 C -0.09 -1.07 6.11 -39.04 -0.24 -1.30 16 4 C -0.10 -1.20 9.79 -39.37 -0.39 -1.58 16 5 C -0.09 -1.10 9.69 -39.61 -0.38 -1.49 16 6 C -0.06 -0.80 5.14 -104.57 -0.54 -1.33 16 7 C -0.07 -1.02 5.76 36.01 0.21 -0.81 16 8 S -0.22 -4.28 20.44 -107.50 -2.20 -6.48 16 9 C -0.05 -0.95 2.77 -26.73 -0.07 -1.02 16 10 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 11 C -0.14 -2.40 9.10 37.16 0.34 -2.06 16 12 C 0.04 1.00 4.45 -27.89 -0.12 0.88 16 13 C -0.51 -14.33 8.53 -34.44 -0.29 -14.63 16 14 H 0.06 1.77 7.60 -52.49 -0.40 1.37 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 C -0.08 -1.10 9.69 -39.61 -0.38 -1.49 16 22 C -0.13 -1.57 9.36 -39.36 -0.37 -1.94 16 23 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.54 7.75 -51.92 -0.40 0.14 16 25 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.08 1.08 7.08 -51.92 -0.37 0.71 16 29 H 0.08 1.14 8.08 -51.92 -0.42 0.72 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.58 6.92 -51.93 -0.36 0.22 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.20 5.88 -52.49 -0.31 0.89 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -30.77 334.56 -10.88 -41.65 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.60 Total: -1.85 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.42 Total: -25.35 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -4.62 Total: -10.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.77 -10.88 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358538347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.204 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds