Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47475 * 2 1 4 4 N 1.46504 * 109.47157 * 240.00130 * 2 1 3 5 5 C 1.34776 * 119.99926 * 84.99696 * 4 2 1 6 6 O 1.21277 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99597 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.46858 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47063 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00088 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00154 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99717 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00297 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46934 * 359.97438 * 13 11 9 15 15 H 1.48489 * 109.47500 * 119.99949 * 13 11 9 16 16 H 1.48499 * 109.47053 * 240.00234 * 13 11 9 17 17 C 1.50700 * 109.47105 * 120.00086 * 2 1 3 18 18 C 1.38234 * 119.60172 * 275.01966 * 17 2 1 19 19 C 1.38610 * 119.17530 * 180.02562 * 18 17 2 20 20 C 1.38787 * 118.40907 * 359.74749 * 19 18 17 21 21 Cl 1.73599 * 120.43238 * 180.27360 * 20 19 18 22 22 C 1.38306 * 119.13496 * 0.47444 * 20 19 18 23 23 N 1.31847 * 119.60390 * 95.00152 * 17 2 1 24 24 H 1.08996 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46842 * 300.00043 * 1 2 3 26 26 H 1.08996 * 109.47308 * 59.99724 * 1 2 3 27 27 H 0.97003 * 119.99364 * 265.00187 * 4 2 1 28 28 H 1.08994 * 109.47676 * 300.00514 * 7 5 4 29 29 H 1.09010 * 109.47198 * 60.00490 * 7 5 4 30 30 H 1.09005 * 109.47291 * 300.00149 * 8 7 5 31 31 H 1.08993 * 109.47129 * 60.00305 * 8 7 5 32 32 H 0.96997 * 119.99777 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.41446 * 0.02562 * 18 17 2 34 34 H 1.07994 * 120.79576 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.62930 * 179.79932 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6499 -0.7285 -3.5874 8 6 2.7018 0.2547 -4.7585 9 6 3.2041 -0.4557 -5.9890 10 1 3.4603 -1.5038 -5.9407 11 6 3.3367 0.2323 -7.1765 12 7 3.0242 1.5085 -7.2354 13 14 3.9586 -0.6485 -8.7019 14 1 4.2377 -2.0696 -8.3737 15 1 2.9276 -0.5795 -9.7683 16 1 5.2056 0.0036 -9.1761 17 6 2.0323 -0.7104 1.2305 18 6 2.1608 -0.0130 2.4170 19 6 2.6242 -0.6750 3.5432 20 6 2.9378 -2.0226 3.4346 21 17 3.5157 -2.9048 4.8136 22 6 2.7878 -2.6525 2.2125 23 7 2.3437 -1.9898 1.1624 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.2490 -1.6318 -1.1526 28 1 3.6492 -1.1204 -3.3979 29 1 1.9777 -1.5509 -3.8325 30 1 1.7026 0.6469 -4.9483 31 1 3.3742 1.0767 -4.5132 32 1 3.1178 1.9926 -8.0707 33 1 1.9033 1.0347 2.4660 34 1 2.7342 -0.1557 4.4837 35 1 3.0326 -3.7002 2.1183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360719647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -24.013168 kcal Electronic energy + Delta-G solvation = -18794.470733 eV Core-core repulsion = 15624.805210 eV Total energy + Delta-G solvation = -3169.665523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88126 -39.07552 -37.12597 -35.41037 -33.40822 -32.92038 -31.90496 -30.79419 -29.44289 -25.79026 -24.62505 -24.16024 -22.21620 -20.86448 -19.62579 -17.70339 -17.14188 -16.88128 -16.25595 -15.52625 -15.15849 -15.05754 -14.62974 -14.38172 -14.02669 -13.65277 -13.44539 -13.07838 -12.87871 -12.44236 -12.18977 -12.03516 -11.95351 -11.64715 -11.32827 -11.11025 -10.92003 -10.55401 -10.30051 -9.99706 -9.91741 -9.63047 -9.28849 -9.13326 -8.96657 -8.75985 -8.29340 -5.93564 -3.97454 0.46101 0.72034 1.58357 3.17467 3.29570 3.34636 3.41412 3.44790 3.51948 3.79766 4.25012 4.29495 4.49776 4.55730 4.75692 5.14898 5.16668 5.18555 5.41533 5.41988 5.45291 5.56539 5.69657 5.92858 6.00581 6.17867 6.28987 6.31483 6.74167 6.95123 7.44811 7.78150 7.90205 7.99194 8.10456 8.42347 8.82411 9.11520 9.65956 11.17481 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002832 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.810945 B = 9884.684242 C =10468.652245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.192 3.808 3 H 0.105 0.895 4 N -0.732 5.732 5 C 0.512 3.488 6 O -0.537 6.537 7 C -0.129 4.129 8 C 0.037 3.963 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.135 3.865 18 C -0.151 4.151 19 C -0.061 4.061 20 C -0.097 4.097 21 Cl -0.057 7.057 22 C 0.122 3.878 23 N -0.463 5.463 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.408 0.592 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -7.504 25.496 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.085 3.915 3 H 0.123 0.877 4 N -0.387 5.387 5 C 0.300 3.700 6 O -0.413 6.413 7 C -0.169 4.169 8 C -0.001 4.001 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.529 5.529 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.003 4.003 18 C -0.171 4.171 19 C -0.087 4.087 20 C -0.126 4.126 21 Cl -0.028 7.028 22 C -0.036 4.036 23 N -0.172 5.172 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.244 0.756 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.389 -7.004 24.637 25.725 hybrid contribution 0.628 -0.557 0.252 0.877 sum -1.760 -7.561 24.889 26.072 Atomic orbital electron populations 1.22165 0.93659 1.02689 1.03100 1.19704 0.94501 0.96301 0.80956 0.87728 1.46191 1.69071 1.14740 1.08745 1.21590 0.76317 0.87578 0.84486 1.90656 1.49344 1.16389 1.84914 1.21857 1.00970 1.01036 0.93055 1.18903 0.98348 0.93323 0.89478 1.21276 1.44108 0.96356 0.94597 0.92548 1.25029 0.95614 0.94853 0.98960 1.70012 1.48345 1.08134 1.26430 0.86538 0.78475 0.79793 0.83181 1.19737 1.21038 1.21056 1.21597 0.93517 0.90067 0.95164 1.21939 1.00777 1.02121 0.92256 1.21534 0.95151 0.92252 0.99810 1.22105 1.05337 0.94248 0.90900 1.98389 1.87158 1.75421 1.41823 1.22807 0.94127 1.00533 0.86122 1.67471 1.10811 1.08606 1.30345 0.92108 0.91817 0.90581 0.75631 0.90264 0.90175 0.95804 0.95842 0.93049 0.83371 0.83533 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.47 37.16 0.35 -1.43 16 2 C 0.19 2.40 2.82 -69.08 -0.19 2.20 16 3 H 0.10 1.39 7.55 -51.93 -0.39 1.00 16 4 N -0.73 -10.83 5.05 -54.93 -0.28 -11.11 16 5 C 0.51 9.90 7.79 -10.99 -0.09 9.82 16 6 O -0.54 -12.40 15.64 5.56 0.09 -12.31 16 7 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 8 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 9 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.13 1.43 5.89 -82.59 -0.49 0.94 16 18 C -0.15 -1.24 9.76 -39.45 -0.39 -1.63 16 19 C -0.06 -0.45 9.98 -39.24 -0.39 -0.84 16 20 C -0.10 -0.79 6.34 -39.35 -0.25 -1.04 16 21 Cl -0.06 -0.42 28.99 -51.86 -1.50 -1.92 16 22 C 0.12 1.09 10.99 -17.50 -0.19 0.90 16 23 N -0.46 -5.03 9.04 -9.44 -0.09 -5.12 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.41 5.44 7.63 -40.82 -0.31 5.13 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -33.82 322.69 -7.99 -41.81 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.47 Total: 0.66 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.32 Total: -6.82 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.37 Total: -43.10 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.82 -7.99 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360719647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.795 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds