Wall clock time and date at job start Tue Mar 31 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46817 * 2 1 4 4 C 1.52997 * 109.47189 * 120.00091 * 2 1 3 5 5 C 1.52998 * 109.46863 * 185.00525 * 4 2 1 6 6 S 1.81400 * 109.46875 * 180.02562 * 5 4 2 7 7 C 1.76201 * 103.00149 * 179.97438 * 6 5 4 8 8 C 1.38980 * 120.08020 * 359.72304 * 7 6 5 9 9 C 1.38081 * 119.92124 * 179.76793 * 8 7 6 10 10 C 1.38308 * 120.07688 * 0.48771 * 9 8 7 11 11 C 1.38296 * 120.15965 * 359.76321 * 10 9 8 12 12 C 1.38082 * 120.08393 * 0.02562 * 11 10 9 13 13 S 1.81397 * 109.47346 * 240.00443 * 2 1 3 14 14 C 1.81404 * 103.00143 * 64.99588 * 13 2 1 15 15 C 1.50701 * 109.47098 * 179.97438 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 H 1.08999 * 109.46852 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47191 * 299.99822 * 1 2 3 25 25 H 1.09002 * 109.47205 * 60.00255 * 1 2 3 26 26 H 1.09000 * 109.46805 * 304.99870 * 4 2 1 27 27 H 1.08994 * 109.46917 * 65.00079 * 4 2 1 28 28 H 1.08997 * 109.47199 * 299.99706 * 5 4 2 29 29 H 1.08994 * 109.47719 * 60.00044 * 5 4 2 30 30 H 1.08006 * 120.03501 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.95899 * 180.23529 * 9 8 7 32 32 H 1.07998 * 119.91703 * 179.74686 * 10 9 8 33 33 H 1.08000 * 119.95757 * 179.97438 * 11 10 9 34 34 H 1.07997 * 120.03772 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.47124 * 60.00087 * 14 13 2 36 36 H 1.09001 * 109.46975 * 300.00209 * 14 13 2 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6131 1.3136 6 16 4.1696 -1.4689 2.7943 7 6 5.9142 -1.2416 2.6988 8 6 6.4679 -0.5385 1.6355 9 6 7.8352 -0.3582 1.5664 10 6 8.6543 -0.8849 2.5485 11 6 8.1073 -1.5896 3.6053 12 6 6.7405 -1.7701 3.6833 13 16 2.1347 -0.8550 -1.4811 14 6 1.5664 0.2155 -2.8309 15 6 1.9985 -0.3687 -4.1512 16 1 2.5586 -1.2918 -4.1759 17 6 1.6779 0.2749 -5.3277 18 7 2.0545 -0.2352 -6.4799 19 14 0.7085 1.8711 -5.2850 20 1 1.6478 3.0185 -5.2034 21 1 -0.1085 1.9871 -6.5195 22 1 -0.1840 1.8766 -4.0982 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6054 -0.2617 2.1369 27 1 1.7517 -1.7714 1.2055 28 1 3.9995 -1.0726 0.4259 29 1 3.8532 0.4371 1.3573 30 1 5.8292 -0.1309 0.8659 31 1 8.2657 0.1913 0.7424 32 1 9.7237 -0.7459 2.4897 33 1 8.7500 -1.9998 4.3702 34 1 6.3142 -2.3208 4.5087 35 1 2.0001 1.2087 -2.7141 36 1 0.4792 0.2882 -2.8037 37 1 1.8293 0.2177 -7.3076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:02 Heat of formation + Delta-G solvation = 0.924116 kcal Electronic energy + Delta-G solvation = -16542.174627 eV Core-core repulsion = 13921.927386 eV Total energy + Delta-G solvation = -2620.247241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.02147 -35.69909 -33.08491 -31.41246 -31.08695 -30.32653 -29.18953 -24.33228 -22.85947 -22.74081 -22.44511 -21.10736 -17.85607 -16.98970 -16.40187 -16.22690 -15.27241 -15.11342 -14.75990 -14.20579 -14.12344 -13.73930 -13.65357 -13.34489 -13.11824 -12.97125 -12.61487 -12.47163 -11.88497 -11.66251 -11.51210 -11.32359 -11.20317 -10.91619 -10.81142 -10.33021 -10.24475 -9.99469 -9.86873 -9.61329 -9.13682 -8.93775 -8.74582 -7.48165 -6.86065 -6.21100 -4.23182 1.07087 1.21770 1.44206 2.35110 2.44028 3.17612 3.25528 3.25695 3.56923 3.61209 4.27469 4.66332 4.70580 4.78798 4.87617 4.95129 5.03944 5.10091 5.24098 5.34068 5.37306 5.51235 5.55101 5.59203 5.77861 5.82993 5.86658 5.97557 6.13173 6.13433 6.22399 6.31911 6.34889 6.55255 6.67899 6.74652 7.40112 8.27292 8.81956 9.34676 10.91064 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003629 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.284585 B = 7713.922495 C = 8656.591972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.080 0.920 4 C -0.078 4.078 5 C -0.105 4.105 6 S -0.129 6.129 7 C -0.078 4.078 8 C -0.131 4.131 9 C -0.099 4.099 10 C -0.130 4.130 11 C -0.105 4.105 12 C -0.105 4.105 13 S -0.264 6.264 14 C 0.048 3.952 15 C -0.514 4.514 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 0.877 20.461 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 H 0.098 0.902 4 C -0.117 4.117 5 C -0.253 4.253 6 S 0.117 5.883 7 C -0.191 4.191 8 C -0.155 4.155 9 C -0.119 4.119 10 C -0.151 4.151 11 C -0.125 4.125 12 C -0.129 4.129 13 S -0.037 6.037 14 C -0.100 4.100 15 C -0.553 4.553 16 H 0.101 0.899 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.191 1.191 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.256 -0.616 21.014 21.934 hybrid contribution -0.335 2.695 -1.144 2.946 sum 5.920 2.079 19.870 20.837 Atomic orbital electron populations 1.22038 0.93448 1.03016 1.01824 1.23068 0.98704 1.01687 0.96347 0.90165 1.21105 0.91645 1.02306 0.96685 1.23860 1.00059 1.03120 0.98242 1.85328 0.98177 1.70709 1.34081 1.21783 0.97053 1.01770 0.98446 1.21333 0.96185 1.00171 0.97776 1.21120 0.93121 0.98957 0.98678 1.21180 0.99855 0.99041 0.94978 1.21061 0.94425 0.98670 0.98315 1.20753 0.93171 1.00682 0.98288 1.86716 1.75737 1.40918 1.00353 1.21420 0.98442 0.95346 0.94774 1.20493 1.36990 1.10876 0.86957 0.89870 1.24862 0.95245 0.97386 0.95001 1.69867 1.45822 1.39582 0.97575 0.86819 0.80674 0.84062 0.78051 1.19927 1.20780 1.19098 0.91415 0.92624 0.92026 0.90391 0.90009 0.87488 0.89468 0.85341 0.85586 0.85930 0.85712 0.85671 0.95402 0.94642 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.10 37.16 0.34 -1.65 16 2 C -0.07 -1.00 2.82 -26.73 -0.08 -1.07 16 3 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 4 C -0.08 -0.97 4.69 -26.73 -0.13 -1.10 16 5 C -0.10 -1.32 4.16 37.16 0.15 -1.17 16 6 S -0.13 -1.59 21.92 -107.50 -2.36 -3.95 16 7 C -0.08 -0.97 6.11 -39.04 -0.24 -1.20 16 8 C -0.13 -1.61 9.36 -39.36 -0.37 -1.98 16 9 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 10 C -0.13 -1.24 10.04 -39.53 -0.40 -1.64 16 11 C -0.10 -1.00 10.04 -39.62 -0.40 -1.39 16 12 C -0.11 -1.15 9.79 -39.37 -0.39 -1.53 16 13 S -0.26 -5.29 19.88 -107.50 -2.14 -7.43 16 14 C 0.05 1.13 4.46 36.01 0.16 1.29 16 15 C -0.51 -14.54 9.68 -34.44 -0.33 -14.87 16 16 H 0.08 2.59 7.96 -52.49 -0.42 2.18 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 19 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.94 6.92 -51.93 -0.36 0.58 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.11 1.55 6.73 -51.93 -0.35 1.20 16 29 H 0.09 1.04 7.76 -51.93 -0.40 0.63 16 30 H 0.13 1.58 5.88 -52.48 -0.31 1.27 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.03 0.64 7.57 -51.92 -0.39 0.25 16 36 H 0.04 0.83 6.20 -51.92 -0.32 0.50 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -30.04 330.02 -11.10 -41.14 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.52 Total: 0.80 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -2.16 Total: -25.63 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.04 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -4.49 Total: -11.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.04 -11.10 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.068 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds