Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46817 * 2 1 4 4 C 1.52997 * 109.47189 * 120.00091 * 2 1 3 5 5 C 1.52998 * 109.46863 * 185.00525 * 4 2 1 6 6 S 1.81400 * 109.46875 * 180.02562 * 5 4 2 7 7 C 1.76201 * 103.00149 * 179.97438 * 6 5 4 8 8 C 1.38980 * 120.08020 * 359.72304 * 7 6 5 9 9 C 1.38081 * 119.92124 * 179.76793 * 8 7 6 10 10 C 1.38308 * 120.07688 * 0.48771 * 9 8 7 11 11 C 1.38296 * 120.15965 * 359.76321 * 10 9 8 12 12 C 1.38082 * 120.08393 * 0.02562 * 11 10 9 13 13 S 1.81397 * 109.47346 * 240.00443 * 2 1 3 14 14 C 1.81404 * 103.00143 * 64.99588 * 13 2 1 15 15 C 1.50701 * 109.47098 * 179.97438 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 H 1.08999 * 109.46852 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47191 * 299.99822 * 1 2 3 25 25 H 1.09002 * 109.47205 * 60.00255 * 1 2 3 26 26 H 1.09000 * 109.46805 * 304.99870 * 4 2 1 27 27 H 1.08994 * 109.46917 * 65.00079 * 4 2 1 28 28 H 1.08997 * 109.47199 * 299.99706 * 5 4 2 29 29 H 1.08994 * 109.47719 * 60.00044 * 5 4 2 30 30 H 1.08006 * 120.03501 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.95899 * 180.23529 * 9 8 7 32 32 H 1.07998 * 119.91703 * 179.74686 * 10 9 8 33 33 H 1.08000 * 119.95757 * 179.97438 * 11 10 9 34 34 H 1.07997 * 120.03772 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.47124 * 60.00087 * 14 13 2 36 36 H 1.09001 * 109.46975 * 300.00209 * 14 13 2 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6131 1.3136 6 16 4.1696 -1.4689 2.7943 7 6 5.9142 -1.2416 2.6988 8 6 6.4679 -0.5385 1.6355 9 6 7.8352 -0.3582 1.5664 10 6 8.6543 -0.8849 2.5485 11 6 8.1073 -1.5896 3.6053 12 6 6.7405 -1.7701 3.6833 13 16 2.1347 -0.8550 -1.4811 14 6 1.5664 0.2155 -2.8309 15 6 1.9985 -0.3687 -4.1512 16 1 2.5586 -1.2918 -4.1759 17 6 1.6779 0.2749 -5.3277 18 7 2.0545 -0.2352 -6.4799 19 14 0.7085 1.8711 -5.2850 20 1 1.6478 3.0185 -5.2034 21 1 -0.1085 1.9871 -6.5195 22 1 -0.1840 1.8766 -4.0982 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6054 -0.2617 2.1369 27 1 1.7517 -1.7714 1.2055 28 1 3.9995 -1.0726 0.4259 29 1 3.8532 0.4371 1.3573 30 1 5.8292 -0.1309 0.8659 31 1 8.2657 0.1913 0.7424 32 1 9.7237 -0.7459 2.4897 33 1 8.7500 -1.9998 4.3702 34 1 6.3142 -2.3208 4.5087 35 1 2.0001 1.2087 -2.7141 36 1 0.4792 0.2882 -2.8037 37 1 1.8293 0.2177 -7.3076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -13.420008 kcal Electronic energy + Delta-G solvation = -16542.796635 eV Core-core repulsion = 13921.927386 eV Total energy + Delta-G solvation = -2620.869248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82201 -36.80509 -35.22417 -32.31826 -31.89866 -31.66830 -30.89497 -25.35773 -24.73212 -23.66896 -23.36936 -22.27852 -19.10753 -18.68613 -17.59255 -17.23794 -16.73558 -16.09484 -15.89816 -15.66031 -15.24822 -15.07655 -14.80683 -14.56019 -14.34419 -14.30151 -13.92213 -13.76186 -13.40816 -12.73940 -12.61590 -12.52062 -12.32108 -12.17996 -12.11108 -11.96290 -11.79879 -11.51326 -11.19830 -10.90434 -10.72482 -10.49470 -9.95700 -8.52119 -8.39146 -8.37211 -6.48282 0.24012 0.39845 0.50208 0.95337 1.31624 1.33733 1.40158 1.44261 1.98013 2.27344 2.75686 2.94121 3.61074 3.80560 3.91492 3.95849 4.00714 4.22369 4.26973 4.37320 4.48680 4.51796 4.58260 4.61114 4.72448 4.78540 4.79079 4.83196 4.94401 5.05098 5.06187 5.24648 5.30583 5.35801 5.44491 5.55279 5.97673 6.05892 6.55993 7.14130 8.77226 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003629 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.284585 B = 7713.922495 C = 8656.591972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 H 0.090 0.910 4 C -0.071 4.071 5 C -0.100 4.100 6 S -0.129 6.129 7 C -0.099 4.099 8 C -0.152 4.152 9 C -0.111 4.111 10 C -0.129 4.129 11 C -0.103 4.103 12 C -0.115 4.115 13 S -0.303 6.303 14 C 0.052 3.948 15 C -0.529 4.529 16 H 0.034 0.966 17 C 0.018 3.982 18 N -0.941 5.941 19 Si 0.953 3.047 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.244 1.244 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 2.494 23.084 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 H 0.109 0.891 4 C -0.110 4.110 5 C -0.249 4.249 6 S 0.116 5.884 7 C -0.212 4.212 8 C -0.176 4.176 9 C -0.131 4.131 10 C -0.149 4.149 11 C -0.123 4.123 12 C -0.138 4.138 13 S -0.076 6.076 14 C -0.096 4.096 15 C -0.568 4.568 16 H 0.052 0.948 17 C -0.182 4.182 18 N -0.580 5.580 19 Si 0.775 3.225 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.168 1.168 23 H 0.084 0.916 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.998 0.991 23.649 24.418 hybrid contribution -0.117 2.083 -1.864 2.798 sum 5.881 3.075 21.785 22.773 Atomic orbital electron populations 1.22031 0.92104 1.03276 1.02789 1.23189 0.99659 1.01540 0.93613 0.89137 1.21092 0.91467 1.02009 0.96452 1.23740 1.00159 1.03362 0.97603 1.85180 0.98825 1.71045 1.33397 1.21937 0.97054 1.02904 0.99313 1.21396 0.97020 1.01163 0.97973 1.21386 0.92755 0.99308 0.99648 1.21561 1.01188 0.97924 0.94230 1.21460 0.94178 0.97814 0.98800 1.21036 0.93908 1.00642 0.98260 1.86798 1.76540 1.41731 1.02519 1.21167 0.98629 0.95877 0.93908 1.20712 1.36652 1.09534 0.89887 0.94815 1.25915 0.96305 1.01692 0.94243 1.70028 1.47561 1.41807 0.98595 0.85629 0.79347 0.78608 0.78952 1.18672 1.20258 1.16778 0.91614 0.89032 0.93523 0.87290 0.90576 0.89930 0.88777 0.86352 0.84414 0.83172 0.82659 0.84508 0.94590 0.94002 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.10 71.98 0.66 -2.89 16 2 C -0.05 -1.37 2.82 30.59 0.09 -1.29 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.07 -1.63 4.69 30.59 0.14 -1.48 16 5 C -0.10 -2.48 4.16 71.98 0.30 -2.18 16 6 S -0.13 -3.11 21.92 -56.49 -1.24 -4.35 16 7 C -0.10 -2.43 6.11 22.62 0.14 -2.29 16 8 C -0.15 -3.76 9.36 22.41 0.21 -3.55 16 9 C -0.11 -2.32 10.04 22.25 0.22 -2.09 16 10 C -0.13 -2.18 10.04 22.30 0.22 -1.96 16 11 C -0.10 -1.70 10.04 22.25 0.22 -1.48 16 12 C -0.11 -2.34 9.79 22.41 0.22 -2.12 16 13 S -0.30 -12.27 19.88 -56.49 -1.12 -13.39 16 14 C 0.05 2.46 4.46 71.24 0.32 2.78 16 15 C -0.53 -31.03 9.68 25.60 0.25 -30.78 16 16 H 0.03 2.24 7.96 -2.91 -0.02 2.22 16 17 C 0.02 1.06 5.47 84.66 0.46 1.52 16 18 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 19 Si 0.95 42.67 27.47 68.60 1.88 44.56 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.30 6.92 -2.39 -0.02 1.28 16 26 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.45 6.73 -2.39 -0.02 2.44 16 29 H 0.09 2.17 7.76 -2.39 -0.02 2.15 16 30 H 0.12 3.04 5.88 -2.91 -0.02 3.03 16 31 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.04 1.62 7.57 -2.39 -0.02 1.61 16 36 H 0.04 1.91 6.20 -2.39 -0.01 1.89 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -67.95 330.02 4.25 -63.70 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.98 Total: 15.51 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.45 Total: -47.81 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.23 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: -15.38 SS G_CDS: -2.36 Total: -17.74 kcal Total: -67.95 4.25 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds