Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99931 * 2 1 4 4 C 1.50699 * 109.47350 * 269.99854 * 3 2 1 5 5 C 1.38260 * 119.99753 * 269.72183 * 4 3 2 6 6 C 1.38218 * 120.02649 * 179.76735 * 5 4 3 7 7 C 1.38235 * 120.01336 * 0.50913 * 6 5 4 8 8 C 1.38327 * 119.98731 * 359.75169 * 7 6 5 9 9 Cl 1.73601 * 120.01461 * 180.02562 * 8 7 6 10 10 C 1.38196 * 119.98982 * 90.00598 * 4 3 2 11 11 C 1.34773 * 120.00095 * 180.02562 * 2 1 3 12 12 O 1.21588 * 120.00151 * 179.72667 * 11 2 1 13 13 N 1.34784 * 119.99935 * 359.97438 * 11 2 1 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 2 15 15 C 1.50699 * 109.46700 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00629 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99714 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00098 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47258 * 59.99641 * 19 17 15 21 21 H 1.48510 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47373 * 299.99470 * 19 17 15 23 23 H 1.09000 * 109.47191 * 269.99858 * 1 2 3 24 24 H 1.09004 * 109.46976 * 30.00047 * 1 2 3 25 25 H 1.08998 * 109.47074 * 149.99450 * 1 2 3 26 26 H 1.09003 * 109.47023 * 30.00279 * 3 2 1 27 27 H 1.09002 * 109.46896 * 149.99872 * 3 2 1 28 28 H 1.07999 * 119.98327 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.98687 * 180.26213 * 6 5 4 30 30 H 1.07997 * 120.00260 * 179.76739 * 7 6 5 31 31 H 1.07995 * 120.00753 * 359.94738 * 10 4 3 32 32 H 0.97005 * 119.99846 * 359.72693 * 13 11 2 33 33 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 34 34 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 35 35 H 0.97003 * 119.99632 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6037 1.3094 -2.0705 6 6 3.8324 1.7041 -3.3752 7 6 2.9115 2.5022 -4.0278 8 6 1.7583 2.9015 -3.3765 9 17 0.6010 3.9032 -4.1955 10 6 1.5274 2.5017 -2.0720 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0055 13 7 1.4650 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0071 15 6 1.2182 -4.7485 -0.0063 16 1 0.1564 -4.5512 -0.0010 17 6 1.6778 -6.0484 -0.0113 18 7 2.9707 -6.2887 -0.0173 19 14 0.4639 -7.4682 -0.0096 20 1 -0.3950 -7.3867 -1.2183 21 1 1.2063 -8.7544 -0.0164 22 1 -0.3847 -7.3926 1.2067 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6084 2.0283 0.5139 27 1 3.1499 1.1383 0.5139 28 1 4.3254 0.6892 -1.5597 29 1 4.7328 1.3922 -3.8836 30 1 3.0922 2.8136 -5.0460 31 1 0.6270 2.8128 -1.5632 32 1 0.4950 -2.3344 0.0039 33 1 2.8201 -3.6586 -0.9000 34 1 2.8282 -3.6632 0.8798 35 1 3.2940 -7.2033 -0.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426411659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = -11.387396 kcal Electronic energy + Delta-G solvation = -19281.451601 eV Core-core repulsion = 16112.333573 eV Total energy + Delta-G solvation = -3169.118029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.95202 -38.90740 -36.62917 -35.27082 -34.22033 -32.51736 -31.49643 -30.77435 -27.58170 -27.09133 -25.25221 -22.73445 -22.57761 -21.43639 -19.32754 -17.96872 -17.09570 -16.06676 -15.91267 -15.71407 -15.41917 -15.04076 -14.64482 -13.87059 -13.73961 -13.39050 -13.32531 -13.12549 -12.86476 -12.41002 -12.09784 -11.88623 -11.71790 -11.57586 -11.53406 -11.27165 -10.99349 -10.96413 -10.86231 -10.28679 -9.46291 -9.38099 -9.01868 -8.74372 -8.72286 -8.45658 -7.74917 -6.15031 -4.21653 1.08620 1.15753 1.99110 3.14465 3.26045 3.31020 3.32776 3.70119 3.88561 4.32120 4.64240 4.68189 4.78800 4.99676 5.16402 5.21031 5.21966 5.26006 5.35094 5.54480 5.66598 5.72716 5.77548 5.87452 6.08761 6.32567 6.48889 6.70583 6.75394 7.10172 7.50968 7.52655 7.57437 7.84425 8.02117 8.75319 8.89585 9.30991 9.47461 10.95165 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.003464 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.867181 B = 8081.834391 C = 8187.619203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.638 5.638 3 C 0.175 3.825 4 C -0.090 4.090 5 C -0.084 4.084 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.041 4.041 9 Cl -0.080 7.080 10 C -0.100 4.100 11 C 0.696 3.304 12 O -0.597 6.597 13 N -0.728 5.728 14 C 0.267 3.733 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.387 0.613 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 19.519 -4.539 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.377 5.377 3 C 0.051 3.949 4 C -0.092 4.092 5 C -0.103 4.103 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.067 4.067 9 Cl -0.051 7.051 10 C -0.120 4.120 11 C 0.397 3.603 12 O -0.476 6.476 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.221 0.779 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.458 19.370 -4.589 20.204 hybrid contribution -1.299 -0.765 -0.237 1.526 sum -4.757 18.604 -4.826 19.800 Atomic orbital electron populations 1.21667 0.80357 1.02766 1.01382 1.47075 1.05901 1.04661 1.80074 1.20101 0.98756 0.84652 0.91404 1.20376 0.94183 0.96716 0.97902 1.21452 0.97259 0.97082 0.94503 1.21182 0.99320 0.97414 0.94942 1.21042 0.92999 0.98758 1.00270 1.20856 0.92772 0.99124 0.93953 1.98357 1.59364 1.68290 1.79103 1.20912 0.99646 0.98521 0.92881 1.16088 0.85536 0.80442 0.78258 1.90836 1.11655 1.86204 1.58879 1.45868 1.09707 1.05667 1.76835 1.18970 0.91986 0.76882 0.97558 1.21185 0.92926 0.90759 1.53251 0.92085 1.24933 0.95399 0.98866 0.94739 1.69968 1.12567 1.20885 1.48864 0.86481 0.80747 0.81033 0.78670 1.20092 1.21061 1.20076 0.92843 0.91556 0.91246 0.90003 0.88629 0.84299 0.85068 0.85258 0.85282 0.77946 0.95796 0.95729 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.20 59.85 0.61 1.55 16 2 N -0.64 -9.64 2.86 -188.74 -0.54 -10.18 16 3 C 0.17 2.21 5.53 -5.20 -0.03 2.18 16 4 C -0.09 -1.14 5.46 -104.63 -0.57 -1.71 16 5 C -0.08 -1.15 9.70 -39.58 -0.38 -1.53 16 6 C -0.11 -1.30 10.05 -39.59 -0.40 -1.70 16 7 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 8 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 9 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.33 16 10 C -0.10 -1.13 9.49 -39.55 -0.38 -1.51 16 11 C 0.70 14.24 8.28 -86.91 -0.72 13.52 16 12 O -0.60 -14.23 15.46 5.29 0.08 -14.14 16 13 N -0.73 -15.73 5.41 -66.42 -0.36 -16.09 16 14 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 15 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 16 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 25 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 26 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 27 H 0.10 1.33 7.37 -51.93 -0.38 0.95 16 28 H 0.14 2.10 7.59 -52.49 -0.40 1.70 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.39 7.27 6.06 -40.82 -0.25 7.02 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -32.08 319.81 -9.00 -41.08 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.26 Total: 4.23 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.95 Total: 2.16 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.16 Total: -51.65 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.08 -9.00 -41.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426411659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.694 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds