Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47305 * 2 1 4 4 N 1.46501 * 109.47254 * 119.99577 * 2 1 3 5 5 C 1.34770 * 120.00392 * 274.99951 * 4 2 1 6 6 O 1.21585 * 119.99825 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00545 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00442 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47077 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00300 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99948 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99929 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46843 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47202 * 120.00246 * 13 11 9 16 16 H 1.48500 * 109.47013 * 240.00478 * 13 11 9 17 17 C 1.50696 * 109.47099 * 239.99498 * 2 1 3 18 18 C 1.38246 * 119.98618 * 100.00212 * 17 2 1 19 19 C 1.38216 * 120.01497 * 180.02562 * 18 17 2 20 20 C 1.38357 * 119.98603 * 359.97165 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38217 * 119.98914 * 359.48757 * 22 20 19 24 24 H 1.09001 * 109.46841 * 300.00200 * 1 2 3 25 25 H 1.08999 * 109.46938 * 59.99956 * 1 2 3 26 26 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99614 * 95.00156 * 4 2 1 28 28 H 0.97004 * 119.99462 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.46855 * 300.00838 * 8 7 5 30 30 H 1.09005 * 109.46772 * 60.00359 * 8 7 5 31 31 H 0.97003 * 120.00519 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00776 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07996 * 119.99353 * 180.23044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5959 -0.6535 3.4578 8 6 2.7364 0.0775 4.7195 9 6 3.2528 -0.8545 5.7852 10 1 3.4564 -1.8879 5.5464 11 6 3.4663 -0.3877 7.0649 12 7 3.2189 0.8708 7.3556 13 14 4.1071 -1.5427 8.3857 14 1 4.3044 -2.8959 7.8066 15 1 5.4021 -1.0327 8.9035 16 1 3.1247 -1.6177 9.4967 17 6 2.0323 -0.7105 -1.2304 18 6 2.4587 0.0196 -2.3241 19 6 2.9190 -0.6315 -3.4531 20 6 2.9536 -2.0142 -3.4882 21 17 3.5322 -2.8325 -4.9056 22 6 2.5218 -2.7443 -2.3953 23 6 2.0661 -2.0921 -1.2651 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.2491 -1.6317 1.1527 28 1 2.8266 -1.5947 3.4142 29 1 3.4381 0.9009 4.5862 30 1 1.7660 0.4722 5.0207 31 1 3.3687 1.1992 8.2559 32 1 2.4313 1.0989 -2.2968 33 1 3.2517 -0.0610 -4.3077 34 1 2.5442 -3.8237 -2.4238 35 1 1.7326 -2.6619 -0.4105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426413466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -23.334524 kcal Electronic energy + Delta-G solvation = -18842.438436 eV Core-core repulsion = 15672.802341 eV Total energy + Delta-G solvation = -3169.636095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15123 -38.94534 -36.89122 -35.35500 -34.03274 -32.43379 -31.50026 -31.06840 -29.13232 -26.97139 -24.07576 -23.30586 -22.54392 -20.92482 -20.01749 -18.35676 -17.41035 -16.31303 -16.05263 -15.50424 -15.07289 -14.77474 -14.57780 -14.18509 -13.86784 -13.80043 -13.56008 -13.10452 -12.99755 -12.52057 -12.01428 -11.96800 -11.81043 -11.77822 -11.44047 -11.14734 -10.99518 -10.91889 -10.89612 -10.30190 -9.44598 -9.35087 -9.34659 -8.94701 -8.77932 -8.69369 -7.77325 -6.15288 -4.21693 0.80674 0.98181 1.83147 3.19239 3.24191 3.31322 3.34174 3.45637 3.93264 4.33105 4.42367 4.46685 4.57353 4.99698 5.02916 5.09095 5.20962 5.28416 5.34006 5.41843 5.61250 5.67581 5.86777 5.91239 5.93014 6.20728 6.28504 6.47511 6.84565 7.10633 7.51271 7.55138 7.57456 7.90040 8.04034 8.76727 8.93452 9.32665 9.47990 10.95009 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002931 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.288018 B = 9549.421423 C =10190.257743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.201 3.799 3 H 0.098 0.902 4 N -0.753 5.753 5 C 0.694 3.306 6 O -0.599 6.599 7 N -0.729 5.729 8 C 0.267 3.733 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.078 4.078 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.038 4.038 21 Cl -0.075 7.075 22 C -0.107 4.107 23 C -0.101 4.101 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.390 0.610 28 H 0.386 0.614 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -7.215 -22.522 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.095 3.905 3 H 0.115 0.885 4 N -0.411 5.411 5 C 0.394 3.606 6 O -0.478 6.478 7 N -0.381 5.381 8 C 0.146 3.854 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.079 4.079 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.065 4.065 21 Cl -0.047 7.047 22 C -0.125 4.125 23 C -0.119 4.119 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.218 0.782 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.505 -6.025 -22.369 23.302 hybrid contribution 0.646 -1.561 0.588 1.789 sum -1.859 -7.587 -21.782 23.140 Atomic orbital electron populations 1.22195 0.94443 1.02219 1.02810 1.19526 0.93890 0.96609 0.80444 0.88450 1.45311 1.73447 1.13316 1.08988 1.16125 0.78893 0.85269 0.80294 1.90869 1.57802 1.14541 1.84638 1.45726 1.68505 1.13588 1.10263 1.18986 0.97239 0.91993 0.77215 1.21263 1.45620 0.96540 0.94520 0.91916 1.24947 0.95277 0.95314 0.98525 1.69988 1.47477 1.14088 1.20740 0.86362 0.78545 0.80637 0.81353 1.19666 1.20821 1.20816 1.20200 0.97905 0.93946 0.95827 1.21026 0.97753 1.00526 0.92128 1.21046 1.00174 0.92234 0.99150 1.20951 1.03105 0.92905 0.89539 1.98371 1.87430 1.79276 1.39579 1.21036 0.99044 1.00435 0.92019 1.20944 0.99288 0.93912 0.97775 0.91058 0.91872 0.92529 0.77594 0.78198 0.95741 0.95712 0.92521 0.84620 0.84816 0.84834 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.46 37.16 0.35 -1.48 16 2 C 0.20 2.52 2.78 -69.09 -0.19 2.32 16 3 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 4 N -0.75 -10.85 5.03 -59.82 -0.30 -11.15 16 5 C 0.69 14.01 8.53 -86.92 -0.74 13.26 16 6 O -0.60 -14.59 16.01 5.29 0.08 -14.51 16 7 N -0.73 -15.43 5.55 -66.42 -0.37 -15.80 16 8 C 0.27 7.11 5.43 -5.19 -0.03 7.09 16 9 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 10 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 13 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 18 C -0.10 -0.88 9.67 -39.59 -0.38 -1.26 16 19 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 20 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 21 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 22 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 23 C -0.10 -0.92 9.05 -39.59 -0.36 -1.27 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.39 4.54 6.88 -40.82 -0.28 4.26 16 28 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.14 1.05 8.04 -52.48 -0.42 0.63 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.02 6.92 -52.49 -0.36 0.65 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -32.35 320.62 -9.14 -41.49 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.29 Total: 6.14 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.31 Total: 0.74 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.07 Total: -52.34 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.35 -9.14 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.154 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds