Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47305 * 2 1 4 4 N 1.46501 * 109.47254 * 119.99577 * 2 1 3 5 5 C 1.34770 * 120.00392 * 274.99951 * 4 2 1 6 6 O 1.21585 * 119.99825 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00545 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00442 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47077 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00300 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99948 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99929 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46843 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47202 * 120.00246 * 13 11 9 16 16 H 1.48500 * 109.47013 * 240.00478 * 13 11 9 17 17 C 1.50696 * 109.47099 * 239.99498 * 2 1 3 18 18 C 1.38246 * 119.98618 * 100.00212 * 17 2 1 19 19 C 1.38216 * 120.01497 * 180.02562 * 18 17 2 20 20 C 1.38357 * 119.98603 * 359.97165 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38217 * 119.98914 * 359.48757 * 22 20 19 24 24 H 1.09001 * 109.46841 * 300.00200 * 1 2 3 25 25 H 1.08999 * 109.46938 * 59.99956 * 1 2 3 26 26 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99614 * 95.00156 * 4 2 1 28 28 H 0.97004 * 119.99462 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.46855 * 300.00838 * 8 7 5 30 30 H 1.09005 * 109.46772 * 60.00359 * 8 7 5 31 31 H 0.97003 * 120.00519 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08002 * 120.00776 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07996 * 119.99353 * 180.23044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5959 -0.6535 3.4578 8 6 2.7364 0.0775 4.7195 9 6 3.2528 -0.8545 5.7852 10 1 3.4564 -1.8879 5.5464 11 6 3.4663 -0.3877 7.0649 12 7 3.2189 0.8708 7.3556 13 14 4.1071 -1.5427 8.3857 14 1 4.3044 -2.8959 7.8066 15 1 5.4021 -1.0327 8.9035 16 1 3.1247 -1.6177 9.4967 17 6 2.0323 -0.7105 -1.2304 18 6 2.4587 0.0196 -2.3241 19 6 2.9190 -0.6315 -3.4531 20 6 2.9536 -2.0142 -3.4882 21 17 3.5322 -2.8325 -4.9056 22 6 2.5218 -2.7443 -2.3953 23 6 2.0661 -2.0921 -1.2651 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.2491 -1.6317 1.1527 28 1 2.8266 -1.5947 3.4142 29 1 3.4381 0.9009 4.5862 30 1 1.7660 0.4722 5.0207 31 1 3.3687 1.1992 8.2559 32 1 2.4313 1.0989 -2.2968 33 1 3.2517 -0.0610 -4.3077 34 1 2.5442 -3.8237 -2.4238 35 1 1.7326 -2.6619 -0.4105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426413466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -44.727304 kcal Electronic energy + Delta-G solvation = -18843.366097 eV Core-core repulsion = 15672.802341 eV Total energy + Delta-G solvation = -3170.563756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27389 -40.18368 -37.67285 -36.58669 -35.89086 -34.39029 -32.50162 -31.99157 -30.08729 -28.91947 -25.28215 -24.40938 -23.87508 -22.11884 -21.42299 -19.92260 -18.46722 -17.86002 -17.41398 -16.70197 -16.35957 -16.32634 -15.91598 -15.39312 -14.95941 -14.83056 -14.46631 -14.42404 -14.21382 -14.00872 -13.79633 -13.31661 -12.89798 -12.79500 -12.73786 -12.51097 -12.27054 -12.20347 -11.98096 -11.75318 -11.42824 -11.22107 -10.80076 -10.30304 -10.02610 -9.66177 -9.55225 -8.27140 -6.43166 0.06689 0.30522 1.14782 1.44662 1.45984 1.59129 1.88480 2.26808 2.40489 2.62638 3.08091 3.52898 3.55242 3.78719 3.93991 4.22566 4.27449 4.38903 4.48135 4.66925 4.74447 4.88805 4.98695 5.10616 5.16381 5.23465 5.27261 5.29807 5.40266 5.51315 5.64089 5.71052 5.77384 5.87213 6.26477 6.69079 7.26110 7.32379 7.74530 8.85429 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002931 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.288018 B = 9549.421423 C =10190.257743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.201 3.799 3 H 0.076 0.924 4 N -0.728 5.728 5 C 0.694 3.306 6 O -0.645 6.645 7 N -0.724 5.724 8 C 0.286 3.714 9 C -0.553 4.553 10 H 0.084 0.916 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.253 1.253 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.087 4.087 18 C -0.100 4.100 19 C -0.109 4.109 20 C -0.046 4.046 21 Cl -0.072 7.072 22 C -0.108 4.108 23 C -0.101 4.101 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.408 0.592 28 H 0.404 0.596 29 H -0.015 1.015 30 H -0.014 1.014 31 H 0.268 0.732 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -9.790 -23.524 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 H 0.095 0.905 4 N -0.386 5.386 5 C 0.393 3.607 6 O -0.527 6.527 7 N -0.377 5.377 8 C 0.162 3.838 9 C -0.591 4.591 10 H 0.102 0.898 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.176 1.176 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.072 4.072 21 Cl -0.043 7.043 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.245 0.755 28 H 0.239 0.761 29 H 0.003 0.997 30 H 0.004 0.996 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.020 -8.670 -23.447 25.080 hybrid contribution 0.476 -0.734 0.759 1.158 sum -1.544 -9.404 -22.688 24.608 Atomic orbital electron populations 1.22133 0.93599 1.03067 1.02278 1.19594 0.94557 0.95785 0.80456 0.90541 1.45088 1.71912 1.13960 1.07652 1.16264 0.78350 0.84773 0.81271 1.90839 1.59530 1.16841 1.85535 1.45306 1.69113 1.14180 1.09136 1.18403 0.94053 0.91622 0.79694 1.21632 1.45359 0.97357 0.94718 0.89834 1.26057 0.95227 0.97009 1.01344 1.70148 1.48702 1.16532 1.21599 0.85104 0.77596 0.78798 0.77655 1.17621 1.20542 1.20474 1.19972 0.99436 0.94457 0.94933 1.21174 0.97440 1.01183 0.92022 1.21230 0.99763 0.92351 0.99431 1.21147 1.02977 0.93250 0.89840 1.98376 1.87369 1.79194 1.39406 1.21239 0.98447 1.01376 0.91575 1.21089 0.98976 0.93404 0.98480 0.94200 0.89768 0.90937 0.75505 0.76068 0.99698 0.99582 0.92268 0.83680 0.83257 0.83127 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.46 71.98 0.68 -2.74 16 2 C 0.20 4.90 2.78 44.24 0.12 5.02 16 3 H 0.08 2.22 7.44 -2.39 -0.02 2.20 16 4 N -0.73 -20.43 5.03 -461.43 -2.32 -22.75 16 5 C 0.69 28.45 8.53 179.06 1.53 29.98 16 6 O -0.65 -32.77 16.01 -3.98 -0.06 -32.84 16 7 N -0.72 -30.96 5.55 -482.30 -2.68 -33.63 16 8 C 0.29 15.82 5.43 85.63 0.46 16.28 16 9 C -0.55 -30.05 9.28 25.60 0.24 -29.81 16 10 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 13 Si 0.99 42.22 29.54 68.60 2.03 44.25 16 14 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 17 C -0.09 -1.62 4.95 -19.86 -0.10 -1.72 16 18 C -0.10 -1.67 9.67 22.27 0.22 -1.46 16 19 C -0.11 -1.68 9.83 22.29 0.22 -1.46 16 20 C -0.05 -0.73 6.32 22.32 0.14 -0.59 16 21 Cl -0.07 -1.11 28.96 -2.72 -0.08 -1.19 16 22 C -0.11 -1.59 9.83 22.29 0.22 -1.37 16 23 C -0.10 -1.58 9.05 22.27 0.20 -1.38 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.41 8.65 6.88 -92.71 -0.64 8.01 16 28 H 0.40 14.15 8.34 -92.71 -0.77 13.37 16 29 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 31 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.15 2.08 8.04 -2.91 -0.02 2.05 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.15 1.79 6.92 -2.91 -0.02 1.77 16 Total: -1.00 -72.09 320.62 1.27 -70.81 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.29 Total: 19.94 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 4.39 Total: 11.39 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -4.71 Total: -112.36 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.06 Total: -32.84 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -72.09 1.27 -70.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.084 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds