Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 N 1.46503 * 109.46994 * 239.99789 * 2 1 3 5 5 C 1.34770 * 119.99769 * 85.00202 * 4 2 1 6 6 O 1.21592 * 120.00452 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99953 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47038 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99984 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99963 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99957 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00096 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47270 * 90.00033 * 13 11 9 15 15 H 1.48502 * 109.47211 * 210.00133 * 13 11 9 16 16 H 1.48503 * 109.47068 * 330.00174 * 13 11 9 17 17 C 1.50696 * 109.46830 * 120.00045 * 2 1 3 18 18 C 1.38246 * 119.98618 * 259.99866 * 17 2 1 19 19 C 1.38216 * 120.01497 * 180.02562 * 18 17 2 20 20 C 1.38357 * 119.98603 * 359.97165 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38217 * 119.98914 * 359.48757 * 22 20 19 24 24 H 1.09001 * 109.47083 * 59.99595 * 1 2 3 25 25 H 1.08998 * 109.47606 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46935 * 300.00529 * 1 2 3 27 27 H 0.97003 * 119.99571 * 265.00551 * 4 2 1 28 28 H 0.96997 * 119.99936 * 0.02562 * 7 5 4 29 29 H 1.09007 * 109.47542 * 300.00381 * 8 7 5 30 30 H 1.08998 * 109.47324 * 60.00800 * 8 7 5 31 31 H 0.97005 * 120.00121 * 180.02562 * 12 11 9 32 32 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 33 33 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 35 35 H 1.07996 * 119.99353 * 180.23044 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5968 -0.6536 -3.4574 8 6 2.7362 0.0771 -4.7195 9 6 3.2528 -0.8550 -5.7851 10 1 3.4572 -1.8882 -5.5460 11 6 3.4654 -0.3885 -7.0650 12 7 3.9167 -1.2017 -7.9948 13 14 3.1124 1.3987 -7.4784 14 1 4.3337 2.2110 -7.2461 15 1 2.7097 1.5069 -8.9037 16 1 2.0134 1.8989 -6.6141 17 6 2.0323 -0.7104 1.2304 18 6 2.4586 0.0197 2.3242 19 6 2.9199 -0.6312 3.4528 20 6 2.9543 -2.0139 3.4881 21 17 3.5329 -2.8322 4.9056 22 6 2.5325 -2.7440 2.3913 23 6 2.0669 -2.0920 1.2649 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2489 -1.6319 -1.1525 28 1 2.8274 -1.5947 -3.4138 29 1 1.7652 0.4704 -5.0209 30 1 3.4368 0.9014 -4.5866 31 1 4.0666 -0.8734 -8.8952 32 1 2.4320 1.0991 2.2964 33 1 3.2533 -0.0607 4.3071 34 1 2.5634 -3.8232 2.4165 35 1 1.7341 -2.6618 0.4101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426413467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = -19.676492 kcal Electronic energy + Delta-G solvation = -18893.224499 eV Core-core repulsion = 15723.747028 eV Total energy + Delta-G solvation = -3169.477471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21851 -39.06359 -36.92502 -35.45316 -34.15157 -32.45760 -31.56600 -31.17888 -29.23194 -27.56467 -24.11011 -23.32208 -22.23354 -20.91453 -20.15285 -18.51671 -17.45506 -16.39825 -16.33495 -15.63271 -15.11384 -14.91626 -14.38668 -14.30615 -13.93957 -13.83213 -13.65593 -13.18075 -13.07409 -12.63945 -12.36926 -12.10624 -12.03524 -11.82353 -11.50159 -11.18430 -11.04477 -10.96276 -10.75899 -9.96225 -9.63203 -9.45663 -9.37994 -9.02273 -8.84341 -8.75198 -8.03880 -6.20437 -4.22373 0.77248 0.95166 1.80982 3.11390 3.28218 3.33983 3.38725 3.43704 3.77895 4.34671 4.36771 4.43531 4.54539 4.89353 4.96415 5.03456 5.15189 5.22471 5.27440 5.37320 5.57922 5.61688 5.81608 5.88217 5.88515 6.14638 6.22537 6.44006 6.73376 6.74606 7.11835 7.23350 7.39872 7.54971 8.28058 8.67991 8.81115 9.18729 9.40885 10.91560 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.002992 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.798966 B = 9356.815845 C = 9824.961536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.201 3.799 3 H 0.098 0.902 4 N -0.751 5.751 5 C 0.697 3.303 6 O -0.602 6.602 7 N -0.722 5.722 8 C 0.238 3.762 9 C -0.542 4.542 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.079 4.079 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.038 4.038 21 Cl -0.075 7.075 22 C -0.106 4.106 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.392 0.608 28 H 0.392 0.608 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.267 0.733 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -2.412 24.356 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.096 3.904 3 H 0.116 0.884 4 N -0.408 5.408 5 C 0.396 3.604 6 O -0.482 6.482 7 N -0.374 5.374 8 C 0.116 3.884 9 C -0.580 4.580 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.531 5.531 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.184 1.184 17 C -0.080 4.080 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.064 4.064 21 Cl -0.046 7.046 22 C -0.125 4.125 23 C -0.119 4.119 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.225 0.775 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.174 -1.387 24.162 24.560 hybrid contribution 0.214 -0.205 -0.168 0.341 sum -3.960 -1.592 23.994 24.371 Atomic orbital electron populations 1.22198 0.94374 1.02316 1.02808 1.19540 0.93937 0.96571 0.80397 0.88429 1.45274 1.73206 1.13444 1.08893 1.16089 0.78737 0.85199 0.80342 1.90862 1.58002 1.14566 1.84748 1.45401 1.68580 1.13837 1.09592 1.19362 0.96644 0.92702 0.79712 1.21096 1.45562 0.97941 0.93435 0.90317 1.24784 0.94003 0.98002 0.95859 1.69881 1.44640 1.35564 1.02998 0.86809 0.79837 0.85045 0.77950 1.19858 1.20953 1.18418 1.20174 0.98103 0.93954 0.95778 1.21014 0.97786 1.00488 0.92143 1.21047 1.00153 0.92245 0.99161 1.20959 1.03043 0.92909 0.89529 1.98374 1.87416 1.79265 1.39516 1.21046 0.98962 1.00494 0.91976 1.20948 0.99189 0.93887 0.97865 0.91111 0.92431 0.91806 0.77361 0.77478 0.95885 0.96354 0.92276 0.84652 0.84801 0.84772 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.46 37.16 0.35 -1.39 16 2 C 0.20 2.39 2.78 -69.08 -0.19 2.20 16 3 H 0.10 1.31 7.44 -51.93 -0.39 0.92 16 4 N -0.75 -10.32 5.03 -59.81 -0.30 -10.62 16 5 C 0.70 13.34 8.53 -86.92 -0.74 12.60 16 6 O -0.60 -13.80 16.01 5.28 0.08 -13.71 16 7 N -0.72 -14.67 5.55 -66.41 -0.37 -15.04 16 8 C 0.24 5.89 4.50 -5.19 -0.02 5.87 16 9 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 10 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 13 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 17 C -0.08 -0.77 4.95 -104.62 -0.52 -1.29 16 18 C -0.10 -0.84 9.67 -39.59 -0.38 -1.23 16 19 C -0.11 -0.91 9.83 -39.55 -0.39 -1.29 16 20 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 21 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.14 16 22 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 23 C -0.10 -0.88 9.05 -39.59 -0.36 -1.24 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.39 4.37 6.88 -40.82 -0.28 4.09 16 28 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 29 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 30 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.14 0.99 8.04 -52.48 -0.42 0.57 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.98 6.91 -52.49 -0.36 0.62 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -32.35 317.02 -8.78 -41.13 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.25 Total: 5.34 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.33 Total: -0.78 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.10 Total: -51.41 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.35 -8.78 -41.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.455 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds