Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46945 * 2 1 4 4 N 1.46499 * 109.47358 * 239.99769 * 2 1 3 5 5 C 1.34784 * 120.00033 * 87.19270 * 4 2 1 6 6 O 1.21591 * 119.99479 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00326 * 180.02562 * 5 4 2 8 8 C 1.46502 * 120.00051 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.46924 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99863 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99732 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00149 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00040 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47193 * 89.99357 * 13 11 9 15 15 H 1.48492 * 109.47376 * 209.99591 * 13 11 9 16 16 H 1.48500 * 109.47022 * 329.99769 * 13 11 9 17 17 C 1.50694 * 109.47053 * 119.99888 * 2 1 3 18 18 C 1.38233 * 120.00918 * 92.76801 * 17 2 1 19 19 C 1.38222 * 120.01693 * 179.97438 * 18 17 2 20 20 C 1.38264 * 120.02484 * 0.02562 * 19 18 17 21 21 C 1.38196 * 120.01181 * 359.97438 * 20 19 18 22 22 C 1.38334 * 120.00985 * 272.74394 * 17 2 1 23 23 Cl 1.73602 * 120.00932 * 0.04656 * 22 17 2 24 24 H 1.09005 * 109.47175 * 60.00223 * 1 2 3 25 25 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47660 * 300.00298 * 1 2 3 27 27 H 0.97000 * 120.00484 * 267.19063 * 4 2 1 28 28 H 0.97000 * 120.00191 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.46860 * 299.99672 * 8 7 5 30 30 H 1.08988 * 109.47174 * 59.99904 * 8 7 5 31 31 H 0.97002 * 120.00050 * 180.02562 * 12 11 9 32 32 H 1.07998 * 119.99325 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98709 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.98971 * 179.70062 * 20 19 18 35 35 H 1.07999 * 120.00302 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1891 -0.0082 -2.3458 6 8 1.9374 1.1805 -2.3903 7 7 2.6379 -0.6436 -3.4463 8 6 2.8230 0.0980 -4.6961 9 6 3.3286 -0.8367 -5.7648 10 1 3.4957 -1.8787 -5.5357 11 6 3.5787 -0.3611 -7.0345 12 7 3.3756 0.9080 -7.3132 13 14 4.2061 -1.5195 -8.3589 14 1 3.0538 -2.1186 -9.0789 15 1 5.0504 -0.7634 -9.3184 16 1 5.0127 -2.5973 -7.7323 17 6 2.0323 -0.7104 1.2304 18 6 2.3172 -2.0621 1.1805 19 6 2.7785 -2.7137 2.3088 20 6 2.9546 -2.0141 3.4883 21 6 2.6701 -0.6627 3.5395 22 6 2.2088 -0.0098 2.4101 23 17 1.8506 1.6876 2.4739 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2189 -1.6390 -1.1607 28 1 2.8384 -1.5920 -3.4110 29 1 1.8705 0.5259 -5.0091 30 1 3.5468 0.8978 -4.5402 31 1 3.5512 1.2424 -8.2066 32 1 2.1794 -2.6092 0.2596 33 1 3.0005 -3.7699 2.2693 34 1 3.3104 -2.5248 4.3709 35 1 2.8074 -0.1165 4.4610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = -18.283906 kcal Electronic energy + Delta-G solvation = -19154.711822 eV Core-core repulsion = 15985.294738 eV Total energy + Delta-G solvation = -3169.417084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16424 -38.89439 -36.61292 -35.56808 -34.01963 -32.42128 -31.31537 -31.00034 -29.23319 -26.95425 -24.12770 -23.20802 -22.48448 -20.94196 -19.99106 -18.40715 -17.32525 -16.21245 -16.05728 -15.53214 -15.04847 -14.78947 -14.50987 -14.17756 -14.11890 -13.80748 -13.46196 -12.95980 -12.80272 -12.35636 -11.94605 -11.93283 -11.75916 -11.67593 -11.62949 -11.25942 -10.94288 -10.87365 -10.66386 -10.28308 -9.39992 -9.35050 -9.20448 -8.97911 -8.75721 -8.67113 -7.74995 -6.13377 -4.19919 0.87066 0.96380 1.95188 3.24452 3.25997 3.32232 3.34369 3.41501 3.96099 4.34211 4.36107 4.49860 4.67677 4.98802 5.02205 5.11278 5.22681 5.30454 5.36875 5.41431 5.59063 5.74994 5.86599 5.93648 6.10213 6.17462 6.28890 6.49083 6.87169 7.12934 7.53609 7.56844 7.59944 7.92235 8.05982 8.78398 8.95799 9.35193 9.50115 10.96883 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003447 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.121083 B = 8120.191723 C = 8726.917869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.197 3.803 3 H 0.106 0.894 4 N -0.753 5.753 5 C 0.694 3.306 6 O -0.597 6.597 7 N -0.729 5.729 8 C 0.267 3.733 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.107 4.107 22 C -0.029 4.029 23 Cl -0.061 7.061 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.389 0.611 28 H 0.386 0.614 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -7.541 22.575 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.091 3.909 3 H 0.123 0.877 4 N -0.412 5.412 5 C 0.394 3.606 6 O -0.476 6.476 7 N -0.381 5.381 8 C 0.146 3.854 9 C -0.580 4.580 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.076 4.076 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.057 4.057 23 Cl -0.032 7.032 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.224 0.776 28 H 0.218 0.782 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.929 -6.102 22.307 23.312 hybrid contribution 0.530 -1.348 -0.712 1.614 sum -2.399 -7.450 21.595 22.970 Atomic orbital electron populations 1.22154 0.94196 1.02145 1.02965 1.19572 0.94066 0.97039 0.80220 0.87651 1.45326 1.73811 1.12180 1.09841 1.16123 0.78812 0.85386 0.80273 1.90876 1.58568 1.13826 1.84346 1.45709 1.68888 1.12594 1.10883 1.18985 0.97069 0.91825 0.77547 1.21226 1.46036 0.95624 0.95117 0.91973 1.24942 0.95297 0.95295 0.98493 1.69979 1.47542 1.13387 1.21361 0.86416 0.78785 0.80462 0.81225 1.20498 1.21026 1.19794 1.19958 0.99062 0.94228 0.94309 1.20925 0.99165 0.93120 0.99000 1.21244 0.98554 1.00377 0.92676 1.21119 1.00049 0.93548 0.98462 1.21047 0.99348 0.94935 0.97287 1.20757 1.03813 0.85846 0.95237 1.98390 1.93213 1.13211 1.98418 0.90994 0.92533 0.91775 0.77607 0.78242 0.95710 0.95715 0.92475 0.85106 0.85222 0.85121 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.49 37.16 0.35 -1.68 16 2 C 0.20 2.79 2.37 -69.09 -0.16 2.63 16 3 H 0.11 1.77 6.39 -51.93 -0.33 1.43 16 4 N -0.75 -11.56 4.98 -59.82 -0.30 -11.86 16 5 C 0.69 14.53 8.55 -86.92 -0.74 13.79 16 6 O -0.60 -15.08 15.97 5.29 0.08 -15.00 16 7 N -0.73 -15.74 5.55 -66.41 -0.37 -16.11 16 8 C 0.27 7.21 5.43 -5.19 -0.03 7.19 16 9 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 10 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 13 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C -0.07 -0.86 5.05 -104.59 -0.53 -1.39 16 18 C -0.10 -1.00 9.23 -39.59 -0.37 -1.36 16 19 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 20 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 21 C -0.11 -0.96 9.83 -39.55 -0.39 -1.34 16 22 C -0.03 -0.33 6.31 -39.50 -0.25 -0.57 16 23 Cl -0.06 -0.71 27.35 -51.86 -1.42 -2.13 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.39 4.73 6.32 -40.82 -0.26 4.47 16 28 H 0.39 7.07 8.34 -40.82 -0.34 6.73 16 29 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.02 0.74 8.14 -51.94 -0.42 0.32 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.13 1.07 6.17 -52.49 -0.32 0.74 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -33.08 317.09 -9.00 -42.08 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.17 Total: 6.64 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -3.33 Total: 1.25 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.07 Total: -53.55 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.08 Total: -15.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.42 Total: -2.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.08 -9.00 -42.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.800 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds