Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46945 * 2 1 4 4 N 1.46499 * 109.47358 * 239.99769 * 2 1 3 5 5 C 1.34784 * 120.00033 * 87.19270 * 4 2 1 6 6 O 1.21591 * 119.99479 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00326 * 180.02562 * 5 4 2 8 8 C 1.46502 * 120.00051 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.46924 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99863 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99732 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00149 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00040 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47193 * 89.99357 * 13 11 9 15 15 H 1.48492 * 109.47376 * 209.99591 * 13 11 9 16 16 H 1.48500 * 109.47022 * 329.99769 * 13 11 9 17 17 C 1.50694 * 109.47053 * 119.99888 * 2 1 3 18 18 C 1.38233 * 120.00918 * 92.76801 * 17 2 1 19 19 C 1.38222 * 120.01693 * 179.97438 * 18 17 2 20 20 C 1.38264 * 120.02484 * 0.02562 * 19 18 17 21 21 C 1.38196 * 120.01181 * 359.97438 * 20 19 18 22 22 C 1.38334 * 120.00985 * 272.74394 * 17 2 1 23 23 Cl 1.73602 * 120.00932 * 0.04656 * 22 17 2 24 24 H 1.09005 * 109.47175 * 60.00223 * 1 2 3 25 25 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47660 * 300.00298 * 1 2 3 27 27 H 0.97000 * 120.00484 * 267.19063 * 4 2 1 28 28 H 0.97000 * 120.00191 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.46860 * 299.99672 * 8 7 5 30 30 H 1.08988 * 109.47174 * 59.99904 * 8 7 5 31 31 H 0.97002 * 120.00050 * 180.02562 * 12 11 9 32 32 H 1.07998 * 119.99325 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98709 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.98971 * 179.70062 * 20 19 18 35 35 H 1.07999 * 120.00302 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1891 -0.0082 -2.3458 6 8 1.9374 1.1805 -2.3903 7 7 2.6379 -0.6436 -3.4463 8 6 2.8230 0.0980 -4.6961 9 6 3.3286 -0.8367 -5.7648 10 1 3.4957 -1.8787 -5.5357 11 6 3.5787 -0.3611 -7.0345 12 7 3.3756 0.9080 -7.3132 13 14 4.2061 -1.5195 -8.3589 14 1 3.0538 -2.1186 -9.0789 15 1 5.0504 -0.7634 -9.3184 16 1 5.0127 -2.5973 -7.7323 17 6 2.0323 -0.7104 1.2304 18 6 2.3172 -2.0621 1.1805 19 6 2.7785 -2.7137 2.3088 20 6 2.9546 -2.0141 3.4883 21 6 2.6701 -0.6627 3.5395 22 6 2.2088 -0.0098 2.4101 23 17 1.8506 1.6876 2.4739 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2189 -1.6390 -1.1607 28 1 2.8384 -1.5920 -3.4110 29 1 1.8705 0.5259 -5.0091 30 1 3.5468 0.8978 -4.5402 31 1 3.5512 1.2424 -8.2066 32 1 2.1794 -2.6092 0.2596 33 1 3.0005 -3.7699 2.2693 34 1 3.3104 -2.5248 4.3709 35 1 2.8074 -0.1165 4.4610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -40.811608 kcal Electronic energy + Delta-G solvation = -19155.688697 eV Core-core repulsion = 15985.294738 eV Total energy + Delta-G solvation = -3170.393958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33199 -40.18646 -37.44401 -36.88244 -35.96526 -34.41127 -32.56683 -31.71882 -30.25594 -28.94741 -25.34009 -24.49167 -23.73399 -22.15972 -21.46514 -19.99831 -18.49631 -17.83240 -17.33546 -16.73866 -16.41424 -16.35019 -15.93014 -15.36542 -15.06960 -14.91799 -14.79621 -14.30196 -14.16972 -14.00259 -13.64545 -13.23350 -12.89446 -12.75615 -12.68545 -12.54435 -12.45550 -12.20953 -12.12065 -11.57882 -11.45969 -11.25433 -10.79283 -10.37271 -9.90664 -9.70510 -9.58592 -8.26997 -6.43577 0.14542 0.26868 1.15259 1.44444 1.47523 1.58361 1.82493 2.23426 2.40536 2.65691 3.08070 3.44732 3.50234 3.79921 4.06100 4.23561 4.25169 4.40685 4.43756 4.60565 4.72458 4.83937 4.91849 5.08951 5.16660 5.24236 5.28334 5.31488 5.45553 5.49935 5.58187 5.68509 5.84951 5.86039 6.23690 6.68148 7.25169 7.30267 7.71546 8.85452 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003447 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.121083 B = 8120.191723 C = 8726.917869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.197 3.803 3 H 0.074 0.926 4 N -0.727 5.727 5 C 0.693 3.307 6 O -0.645 6.645 7 N -0.721 5.721 8 C 0.285 3.715 9 C -0.554 4.554 10 H 0.085 0.915 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.987 3.013 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.255 1.255 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.046 4.046 23 Cl -0.079 7.079 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.408 0.592 28 H 0.405 0.595 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -11.224 23.923 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.092 0.908 4 N -0.386 5.386 5 C 0.393 3.607 6 O -0.528 6.528 7 N -0.375 5.375 8 C 0.162 3.838 9 C -0.592 4.592 10 H 0.103 0.897 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.810 3.190 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.178 1.178 17 C -0.095 4.095 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.073 4.073 23 Cl -0.050 7.050 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.240 0.760 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.089 -9.860 23.726 25.778 hybrid contribution 0.261 -0.213 -0.983 1.039 sum -1.829 -10.073 22.743 24.941 Atomic orbital electron populations 1.22077 0.93462 1.03123 1.02094 1.19560 0.94700 0.95866 0.80737 0.90809 1.45057 1.72245 1.12912 1.08398 1.16272 0.78309 0.84877 0.81253 1.90846 1.60375 1.16274 1.85276 1.45275 1.69326 1.13215 1.09684 1.18416 0.93876 0.91565 0.79941 1.21601 1.45826 0.96510 0.95253 0.89701 1.26077 0.95168 0.97033 1.01365 1.70149 1.48725 1.15926 1.22219 0.85127 0.78330 0.78114 0.77446 1.19585 1.21048 1.17823 1.19737 1.01388 0.95214 0.93120 1.21136 0.99115 0.92184 1.00428 1.21626 0.96968 1.01818 0.91874 1.21561 0.98263 0.92865 0.99574 1.21333 0.98701 0.95809 0.97096 1.20945 1.05113 0.85169 0.96054 1.98382 1.93432 1.14737 1.98459 0.93922 0.90525 0.90550 0.75298 0.75972 0.99639 0.99756 0.92265 0.83879 0.82164 0.81858 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.49 71.98 0.68 -3.24 16 2 C 0.20 5.64 2.37 44.24 0.10 5.74 16 3 H 0.07 2.61 6.39 -2.39 -0.02 2.60 16 4 N -0.73 -22.19 4.98 -461.42 -2.30 -24.49 16 5 C 0.69 29.87 8.55 179.05 1.53 31.40 16 6 O -0.65 -34.49 15.97 -4.00 -0.06 -34.55 16 7 N -0.72 -31.67 5.55 -482.29 -2.68 -34.34 16 8 C 0.29 16.09 5.43 85.63 0.46 16.55 16 9 C -0.55 -30.40 9.28 25.60 0.24 -30.17 16 10 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 13 Si 0.99 42.41 29.54 68.60 2.03 44.44 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 17 C -0.09 -2.06 5.05 -19.84 -0.10 -2.16 16 18 C -0.11 -1.81 9.23 22.26 0.21 -1.60 16 19 C -0.11 -1.22 10.05 22.27 0.22 -1.00 16 20 C -0.10 -1.17 10.05 22.27 0.22 -0.94 16 21 C -0.11 -1.69 9.83 22.29 0.22 -1.47 16 22 C -0.05 -0.97 6.31 22.32 0.14 -0.83 16 23 Cl -0.08 -1.87 27.35 -2.72 -0.07 -1.94 16 24 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.41 9.24 6.32 -92.71 -0.59 8.65 16 28 H 0.40 14.43 8.34 -92.71 -0.77 13.66 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.14 1.87 6.17 -2.91 -0.02 1.85 16 33 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.69 317.09 1.36 -74.33 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.23 Total: 20.19 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.40 Total: 12.92 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -4.69 Total: -115.39 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.06 Total: -34.55 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -75.69 1.36 -74.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.523 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds