Wall clock time and date at job start Tue Mar 31 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47037 * 2 1 4 4 C 1.46897 * 110.99669 * 193.94827 * 3 2 1 5 5 C 1.50710 * 109.46946 * 66.04695 * 4 3 2 6 6 O 1.21289 * 119.99846 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99913 * 179.97438 * 5 4 3 8 8 C 1.37102 * 120.00091 * 179.97438 * 7 5 4 9 9 H 1.07994 * 119.99489 * 0.02562 * 8 7 5 10 10 C 1.38947 * 119.99979 * 180.02562 * 8 7 5 11 11 N 1.31413 * 120.00090 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99653 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47077 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47003 * 119.99799 * 12 10 8 15 15 H 1.48496 * 109.47130 * 239.99627 * 12 10 8 16 16 C 1.39748 * 111.00112 * 69.99668 * 3 2 1 17 17 C 1.38889 * 120.07573 * 60.00036 * 16 3 2 18 18 C 1.38119 * 119.93638 * 180.02562 * 17 16 3 19 19 C 1.38292 * 120.09342 * 359.97438 * 18 17 16 20 20 C 1.38275 * 120.15949 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.05663 * 0.02562 * 20 19 18 22 22 Cl 1.73609 * 120.04376 * 179.97438 * 21 20 19 23 23 H 1.08990 * 109.47343 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47470 * 300.00519 * 1 2 3 25 25 H 1.09002 * 109.46492 * 59.99761 * 1 2 3 26 26 H 1.09000 * 109.46749 * 239.99580 * 2 1 3 27 27 H 1.09001 * 109.46256 * 119.99742 * 2 1 3 28 28 H 1.09003 * 109.47306 * 186.04226 * 4 3 2 29 29 H 1.08996 * 109.47373 * 306.05026 * 4 3 2 30 30 H 0.96999 * 119.99974 * 0.02562 * 7 5 4 31 31 H 0.97005 * 119.99753 * 180.02562 * 11 10 8 32 32 H 1.07993 * 120.03337 * 359.97438 * 17 16 3 33 33 H 1.07997 * 119.95352 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.92080 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.97037 * 179.74406 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4376 -0.3306 5 6 3.6537 0.9853 -1.7537 6 8 2.7009 0.6524 -2.4264 7 7 4.8943 0.9517 -2.2791 8 6 5.0796 0.5397 -3.5736 9 1 4.2314 0.2425 -4.1723 10 6 6.3587 0.5046 -4.1151 11 7 7.3909 0.8658 -3.3864 12 14 6.6111 -0.0560 -5.8790 13 1 5.2989 -0.4069 -6.4794 14 1 7.2371 1.0397 -6.6619 15 1 7.4979 -1.2470 -5.8979 16 6 1.7659 2.0060 1.2259 17 6 2.3052 1.4848 2.3950 18 6 2.0520 2.1006 3.6051 19 6 1.2629 3.2352 3.6542 20 6 0.7249 3.7580 2.4926 21 6 0.9741 3.1470 1.2781 22 17 0.2979 3.8032 -0.1800 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 3.8114 2.4599 -0.2191 29 1 4.0027 0.7815 0.3417 30 1 5.6562 1.2183 -1.7412 31 1 8.2839 0.8416 -3.7646 32 1 2.9211 0.5986 2.3579 33 1 2.4715 1.6958 4.5143 34 1 1.0671 3.7147 4.6019 35 1 0.1058 4.6418 2.5349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440647216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:39 Heat of formation + Delta-G solvation = -6.615361 kcal Electronic energy + Delta-G solvation = -19769.999915 eV Core-core repulsion = 16601.088818 eV Total energy + Delta-G solvation = -3168.911098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07270 -38.21248 -36.29294 -36.07228 -33.84264 -31.34352 -30.87214 -30.75917 -29.66190 -26.34054 -24.17808 -23.29300 -22.40743 -20.72632 -19.15106 -17.85010 -17.43139 -16.16690 -15.70284 -15.31074 -15.15350 -14.55691 -14.34357 -14.01484 -13.86175 -13.73529 -13.35986 -13.02959 -12.31753 -12.26484 -11.93746 -11.60789 -11.52192 -11.38356 -11.32510 -11.18380 -11.02046 -10.63827 -10.45510 -10.32778 -10.21429 -9.46573 -8.97856 -8.62461 -8.43855 -8.02290 -7.92209 -6.40509 -3.81111 1.12483 1.15293 2.40224 3.17291 3.27926 3.35085 3.53481 3.84403 3.92091 4.22574 4.75751 4.84462 5.01834 5.10520 5.23448 5.25587 5.35697 5.47916 5.60291 5.67175 5.79395 5.86698 5.88710 6.04285 6.12119 6.22834 6.28928 6.31473 6.50971 6.57697 6.64256 7.18073 7.56115 7.58072 8.07656 8.62803 9.19465 9.55442 10.07017 10.77366 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.004279 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.194893 B = 6542.509996 C = 6722.267196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 N -0.477 5.477 4 C 0.052 3.948 5 C 0.446 3.554 6 O -0.572 6.572 7 N -0.564 5.564 8 C -0.297 4.297 9 H 0.104 0.896 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.929 3.071 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.110 3.890 17 C -0.140 4.140 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.014 4.014 22 Cl -0.049 7.049 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.392 0.608 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 3.404 14.851 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 N -0.199 5.199 4 C -0.077 4.077 5 C 0.231 3.769 6 O -0.456 6.456 7 N -0.201 5.201 8 C -0.426 4.426 9 H 0.122 0.878 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.756 3.244 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.015 3.985 17 C -0.160 4.160 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.131 4.131 21 C -0.042 4.042 22 Cl -0.020 7.020 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.225 0.775 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.377 3.475 13.795 17.609 hybrid contribution 1.198 -0.402 0.039 1.264 sum -9.179 3.073 13.834 16.885 Atomic orbital electron populations 1.21661 0.95088 1.00839 1.02056 1.22310 0.96143 0.86822 1.01876 1.59236 1.16462 1.18546 1.25635 1.21892 0.86909 1.02110 0.96825 1.19611 0.84105 0.85045 0.88155 1.90510 1.40277 1.52991 1.61816 1.41856 1.06451 1.58398 1.13403 1.19744 0.94072 1.40480 0.88322 0.87824 1.25251 0.94995 0.97571 1.00118 1.69624 0.99261 1.48251 1.37225 0.85812 0.78549 0.78132 0.81929 1.19209 1.20760 1.20808 1.18739 0.96134 0.93913 0.89699 1.21730 1.00716 1.00893 0.92699 1.21087 0.98348 0.95853 0.97612 1.21066 0.98164 0.96599 0.97797 1.21023 1.00932 1.00438 0.90710 1.21007 0.99115 0.95571 0.88491 1.98385 1.83227 1.84571 1.35828 0.92736 0.93828 0.91429 0.87700 0.95604 0.89287 0.93098 0.77522 0.91956 0.85422 0.85716 0.85400 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.95 37.16 0.37 -1.69 16 2 C 0.05 0.90 5.16 -3.82 -0.02 0.88 16 3 N -0.48 -8.21 3.60 -172.43 -0.62 -8.83 16 4 C 0.05 0.96 5.09 -4.97 -0.03 0.93 16 5 C 0.45 10.48 7.37 -10.98 -0.08 10.40 16 6 O -0.57 -15.24 14.02 5.55 0.08 -15.16 16 7 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 8 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 9 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 10 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 12 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 C 0.11 1.62 3.74 -83.73 -0.31 1.31 16 17 C -0.14 -1.73 8.56 -39.38 -0.34 -2.07 16 18 C -0.11 -1.11 10.04 -39.61 -0.40 -1.51 16 19 C -0.12 -1.13 10.04 -39.55 -0.40 -1.53 16 20 C -0.11 -1.24 9.82 -39.58 -0.39 -1.63 16 21 C -0.01 -0.20 6.34 -39.32 -0.25 -0.44 16 22 Cl -0.05 -0.75 28.44 -51.86 -1.47 -2.22 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.61 7.52 -51.93 -0.39 0.22 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.10 2.07 5.79 -51.93 -0.30 1.77 16 27 H 0.03 0.38 6.83 -51.93 -0.35 0.02 16 28 H 0.09 1.56 8.06 -51.93 -0.42 1.15 16 29 H 0.05 0.83 7.68 -51.93 -0.40 0.43 16 30 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 1.48 7.12 -52.49 -0.37 1.11 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -30.55 313.37 -7.92 -38.47 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.18 Total: 8.39 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.08 Total: -3.24 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.05 Total: -47.02 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.47 Total: -2.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.55 -7.92 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440647216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.851 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds