Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99820 * 2 1 4 4 C 1.46901 * 111.00392 * 123.95170 * 2 1 3 5 5 C 1.50703 * 109.46691 * 66.04893 * 4 2 1 6 6 O 1.21280 * 119.99938 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99903 * 180.27650 * 5 4 2 8 8 C 1.39271 * 120.00128 * 175.47679 * 7 5 4 9 9 C 1.39461 * 119.83668 * 34.72089 * 8 7 5 10 10 C 1.36376 * 120.18093 * 179.75975 * 9 8 7 11 11 C 1.40892 * 119.84781 * 0.51657 * 10 9 8 12 12 C 1.41145 * 120.16128 * 179.76176 * 11 10 9 13 13 H 1.08001 * 119.99814 * 34.74879 * 12 11 10 14 14 C 1.39900 * 120.00404 * 214.74837 * 12 11 10 15 15 N 1.30882 * 119.99534 * 355.59795 * 14 12 11 16 16 Si 1.86794 * 120.00422 * 175.60089 * 14 12 11 17 17 H 1.48506 * 109.46969 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47566 * 120.00011 * 16 14 12 19 19 H 1.48510 * 109.47089 * 240.00249 * 16 14 12 20 20 C 1.40843 * 119.68305 * 359.73781 * 11 10 9 21 21 C 1.36485 * 119.81689 * 0.02562 * 20 11 10 22 22 Cl 1.73602 * 119.92446 * 179.97438 * 21 20 11 23 23 H 1.09003 * 109.47268 * 296.04346 * 1 2 3 24 24 H 1.08999 * 109.47559 * 56.04462 * 1 2 3 25 25 H 1.08999 * 109.47043 * 176.04743 * 1 2 3 26 26 H 1.09006 * 109.47016 * 183.94907 * 3 2 1 27 27 H 1.08992 * 109.47281 * 303.95339 * 3 2 1 28 28 H 1.09005 * 109.46875 * 63.95817 * 3 2 1 29 29 H 1.08995 * 109.47226 * 306.04984 * 4 2 1 30 30 H 1.08997 * 109.47463 * 186.04444 * 4 2 1 31 31 H 0.97008 * 120.00110 * 355.47911 * 7 5 4 32 32 H 1.07999 * 119.91196 * 0.02562 * 9 8 7 33 33 H 1.07998 * 120.07779 * 180.23059 * 10 9 8 34 34 H 0.96996 * 119.99692 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.09621 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6370 -2.2204 0.9728 6 8 1.0055 -2.5832 0.0030 7 7 2.0138 -3.1171 1.9057 8 6 1.6028 -4.4438 1.8024 9 6 1.4715 -5.0337 0.5456 10 6 1.0743 -6.3338 0.4365 11 6 0.7856 -7.0785 1.5971 12 6 0.3691 -8.4230 1.4917 13 1 0.7683 -9.0522 0.7100 14 6 -0.5608 -8.9406 2.3998 15 7 -0.9795 -8.2052 3.3982 16 14 -1.2047 -10.6812 2.1874 17 1 -0.5798 -11.2973 0.9893 18 1 -0.8676 -11.4840 3.3902 19 1 -2.6791 -10.6457 2.0131 20 6 0.9150 -6.4752 2.8632 21 6 1.3183 -5.1746 2.9571 22 17 1.4781 -4.4279 4.5161 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3433 -0.0708 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8724 0.9234 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6611 1.1756 31 1 2.5712 -2.8385 2.6491 32 1 1.6891 -4.4608 -0.3437 33 1 0.9768 -6.7901 -0.5375 34 1 -1.6245 -8.5639 4.0276 35 1 0.6959 -7.0399 3.7572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452640922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -12.297948 kcal Electronic energy + Delta-G solvation = -19504.217879 eV Core-core repulsion = 16335.060366 eV Total energy + Delta-G solvation = -3169.157513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86603 -37.83293 -36.45643 -35.53045 -34.39387 -33.02893 -29.68007 -29.42095 -28.07511 -27.54016 -25.03076 -22.63336 -21.65864 -20.78238 -19.65004 -17.59541 -17.01133 -16.51333 -15.69333 -15.42852 -14.97947 -14.55895 -14.46028 -14.17112 -13.44149 -13.11755 -12.82542 -12.56149 -12.44623 -12.35595 -12.01361 -11.70351 -11.67589 -11.51864 -11.41652 -11.11280 -10.95218 -10.55771 -10.31674 -9.97897 -9.76310 -9.50391 -9.15798 -8.96146 -8.35657 -7.55542 -7.01529 -6.72788 -4.47468 2.36922 2.83364 2.98283 3.06187 3.11095 3.14021 3.23668 3.48371 3.90845 4.12790 4.55707 4.99530 5.02935 5.22352 5.27201 5.30179 5.45136 5.58770 5.59039 5.69565 6.17231 6.20931 6.52165 6.66026 6.82630 6.88297 6.96577 7.01453 7.14763 7.32290 7.58281 7.67336 7.87427 8.08713 8.14308 8.42894 8.68953 8.78453 8.82658 10.17585 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.004287 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.302045 B = 6529.800896 C = 7132.166605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.529 5.529 3 C 0.025 3.975 4 C 0.037 3.963 5 C 0.502 3.498 6 O -0.513 6.513 7 N -0.653 5.653 8 C 0.014 3.986 9 C -0.075 4.075 10 C -0.201 4.201 11 C 0.108 3.892 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.804 5.804 16 Si 0.918 3.082 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.136 4.136 21 C -0.022 4.022 22 Cl -0.121 7.121 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.397 0.603 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.280 0.720 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 11.542 0.095 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.123 4.123 4 C -0.095 4.095 5 C 0.288 3.712 6 O -0.388 6.388 7 N -0.297 5.297 8 C -0.079 4.079 9 C -0.095 4.095 10 C -0.221 4.221 11 C 0.104 3.896 12 C -0.486 4.486 13 H 0.099 0.901 14 C -0.147 4.147 15 N -0.431 5.431 16 Si 0.743 3.257 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.157 4.157 21 C -0.051 4.051 22 Cl -0.092 7.092 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.231 0.769 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.044 11.143 -0.703 11.875 hybrid contribution -0.428 -0.021 1.365 1.430 sum 3.616 11.122 0.661 11.714 Atomic orbital electron populations 1.22590 0.86314 1.04560 0.99581 1.61623 1.09096 1.12964 1.41605 1.22419 1.00728 0.88596 1.00548 1.21981 1.01824 0.92230 0.93434 1.20396 0.80134 0.87217 0.83423 1.90644 1.38864 1.79885 1.29374 1.42944 1.51463 1.07832 1.27483 1.16905 1.14676 0.83662 0.92691 1.20415 0.99617 0.94663 0.94798 1.20912 1.09630 0.93725 0.97867 1.17612 0.88746 0.93410 0.89793 1.19545 1.21073 0.95844 1.12094 0.90052 1.25934 0.95691 0.99528 0.93589 1.69750 1.25360 1.36849 1.11124 0.86091 0.79049 0.81272 0.79298 1.18456 1.19879 1.19873 1.21205 1.02324 0.91985 1.00153 1.20436 1.07430 0.95124 0.82066 1.98248 1.96909 1.83384 1.30701 0.96258 0.91565 0.88901 0.91342 0.91088 0.95756 0.92054 0.88157 0.76853 0.86259 0.87874 0.90848 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.21 60.06 0.55 0.78 16 2 N -0.53 -6.94 4.76 -252.72 -1.20 -8.14 16 3 C 0.03 0.24 9.57 60.07 0.57 0.81 16 4 C 0.04 0.46 5.45 -4.97 -0.03 0.44 16 5 C 0.50 8.65 7.39 -10.99 -0.08 8.57 16 6 O -0.51 -10.73 11.70 5.56 0.06 -10.66 16 7 N -0.65 -11.49 5.01 -9.71 -0.05 -11.54 16 8 C 0.01 0.31 6.32 -83.53 -0.53 -0.21 16 9 C -0.07 -1.73 8.61 -39.80 -0.34 -2.07 16 10 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 11 C 0.11 2.77 5.55 -106.80 -0.59 2.18 16 12 C -0.46 -11.67 9.02 -37.86 -0.34 -12.01 16 13 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 14 C 0.07 1.68 5.42 -17.33 -0.09 1.59 16 15 N -0.80 -20.38 10.60 55.55 0.59 -19.79 16 16 Si 0.92 18.44 29.56 -169.99 -5.03 13.41 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.14 -3.42 8.38 -39.23 -0.33 -3.75 16 21 C -0.02 -0.51 6.30 -39.71 -0.25 -0.76 16 22 Cl -0.12 -2.30 27.92 -51.86 -1.45 -3.75 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 25 H 0.09 1.53 5.88 -51.93 -0.31 1.22 16 26 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 30 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 31 H 0.40 5.85 8.05 -40.82 -0.33 5.52 16 32 H 0.12 2.72 6.18 -52.49 -0.32 2.39 16 33 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 35 H 0.14 3.77 6.13 -52.49 -0.32 3.45 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -28.46 309.10 -8.45 -36.92 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.20 Total: 8.57 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.84 Total: -9.68 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.66 Total: -39.47 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.45 Total: -3.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.46 -8.45 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452640922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.618 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds