Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47405 * 2 1 4 4 N 1.46496 * 109.47080 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00183 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99765 * 0.02562 * 5 4 3 7 7 N 1.34766 * 120.00134 * 180.28194 * 5 4 3 8 8 C 1.39278 * 120.00015 * 175.47950 * 7 5 4 9 9 C 1.39461 * 119.83843 * 34.73262 * 8 7 5 10 10 C 1.36382 * 120.17775 * 179.72535 * 9 8 7 11 11 C 1.40888 * 119.84842 * 0.54669 * 10 9 8 12 12 C 1.41158 * 120.15859 * 179.74636 * 11 10 9 13 13 H 1.07997 * 119.99449 * 34.75735 * 12 11 10 14 14 C 1.39887 * 119.99969 * 214.75195 * 12 11 10 15 15 N 1.30884 * 120.00114 * 355.59480 * 14 12 11 16 16 Si 1.86792 * 119.99892 * 175.59070 * 14 12 11 17 17 H 1.48502 * 109.47365 * 90.00216 * 16 14 12 18 18 H 1.48505 * 109.47280 * 209.99922 * 16 14 12 19 19 H 1.48498 * 109.47328 * 330.00114 * 16 14 12 20 20 C 1.40844 * 119.68259 * 359.72662 * 11 10 9 21 21 C 1.36477 * 119.82012 * 359.97438 * 20 11 10 22 22 Cl 1.73592 * 119.92635 * 179.97438 * 21 20 11 23 23 H 1.08995 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46952 * 300.00133 * 1 2 3 25 25 H 1.08994 * 109.46571 * 59.99575 * 1 2 3 26 26 H 1.08999 * 109.46952 * 239.99867 * 2 1 3 27 27 H 1.09002 * 109.47124 * 120.00135 * 2 1 3 28 28 H 1.09005 * 109.46567 * 60.00269 * 3 2 1 29 29 H 1.08993 * 109.47211 * 300.00152 * 3 2 1 30 30 H 0.97000 * 120.00392 * 0.02562 * 4 3 2 31 31 H 0.97005 * 120.00433 * 355.47458 * 7 5 4 32 32 H 1.08000 * 119.91496 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.07461 * 180.25187 * 10 9 8 34 34 H 0.97000 * 120.00203 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.09022 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1791 2.6096 0.0002 6 8 3.5712 3.6625 -0.0002 7 7 5.5267 2.6095 -0.0050 8 6 6.2228 3.8120 -0.1005 9 6 5.7112 4.9599 0.5042 10 6 6.3899 6.1398 0.4198 11 6 7.6052 6.2004 -0.2902 12 6 8.3104 7.4195 -0.3863 13 1 8.3031 8.1141 0.4407 14 6 9.0187 7.7278 -1.5525 15 7 9.0994 6.8505 -2.5204 16 14 9.8492 9.3916 -1.7285 17 1 11.2363 9.3105 -1.2045 18 1 9.8835 9.7787 -3.1618 19 1 9.0882 10.4086 -0.9592 20 6 8.1135 5.0388 -0.9034 21 6 7.4265 3.8636 -0.8054 22 17 8.0500 2.4304 -1.5606 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 1.6768 1.9563 -0.8899 30 1 3.9901 0.6023 0.0006 31 1 6.0120 1.7719 0.0579 32 1 4.7770 4.9134 1.0442 33 1 5.9942 7.0268 0.8921 34 1 9.5902 7.0644 -3.3293 35 1 9.0447 5.0777 -1.4490 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455744959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -28.978055 kcal Electronic energy + Delta-G solvation = -19178.964501 eV Core-core repulsion = 16009.083684 eV Total energy + Delta-G solvation = -3169.880817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.93715 -37.75092 -35.81714 -35.48646 -34.33302 -33.13603 -32.29528 -29.41446 -28.94729 -26.37825 -24.68688 -22.02450 -21.62434 -20.95966 -20.09957 -17.96383 -17.36385 -16.80726 -15.82712 -15.42758 -15.01990 -14.65233 -14.30287 -14.15464 -13.48573 -13.05590 -12.93728 -12.67438 -12.48255 -12.25992 -12.17172 -11.63055 -11.39780 -11.30938 -11.15194 -11.07340 -10.91724 -10.55816 -10.30339 -10.02730 -9.73737 -9.55116 -9.27743 -8.98645 -8.85657 -7.51146 -6.95214 -6.68313 -4.42874 2.48588 2.87917 3.01466 3.07444 3.09190 3.13690 3.24383 3.69130 3.94084 4.59758 4.61558 4.67763 4.77642 5.04920 5.43502 5.45562 5.48107 5.57939 5.80204 5.95137 5.99706 6.23252 6.53195 6.60494 6.72020 6.89814 7.02616 7.13775 7.28615 7.38796 7.72497 7.74452 7.95998 8.14521 8.42079 8.47065 8.78848 8.83397 9.05441 10.22223 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003855 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.805387 B = 7260.881855 C = 7903.649446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.139 3.861 4 N -0.753 5.753 5 C 0.697 3.303 6 O -0.579 6.579 7 N -0.666 5.666 8 C 0.033 3.967 9 C -0.076 4.076 10 C -0.200 4.200 11 C 0.106 3.894 12 C -0.456 4.456 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.806 5.806 16 Si 0.918 3.082 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.135 4.135 21 C -0.024 4.024 22 Cl -0.121 7.121 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.280 0.720 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 -11.610 3.006 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.015 3.985 4 N -0.410 5.410 5 C 0.397 3.603 6 O -0.456 6.456 7 N -0.312 5.312 8 C -0.061 4.061 9 C -0.097 4.097 10 C -0.220 4.220 11 C 0.103 3.897 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.147 4.147 15 N -0.432 5.432 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.156 4.156 21 C -0.053 4.053 22 Cl -0.093 7.093 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.988 -10.790 2.685 13.691 hybrid contribution 0.862 -0.286 -0.385 0.987 sum -7.126 -11.076 2.300 13.370 Atomic orbital electron populations 1.21671 0.94661 1.01930 1.02406 1.21739 0.96823 0.96207 1.02584 1.21177 0.78615 0.96453 1.02303 1.45124 1.07022 1.07146 1.81680 1.15974 0.81901 0.84043 0.78341 1.90899 1.67745 1.29836 1.57085 1.42040 1.04034 1.08720 1.76452 1.16713 0.94827 0.86250 1.08319 1.20429 0.99165 0.91537 0.98528 1.20906 0.96395 0.96613 1.08094 1.17599 0.90181 0.92261 0.89673 1.19480 1.26098 1.02432 1.00673 0.90170 1.25916 0.94424 0.99035 0.95346 1.69742 1.33230 1.34521 1.05749 0.86149 0.79756 0.81622 0.78214 1.19445 1.20239 1.18639 1.21188 1.01530 0.88721 1.04142 1.20412 0.96626 0.87413 1.00818 1.98244 1.87602 1.41532 1.81915 0.92354 0.92338 0.92314 0.91394 0.91435 0.91818 0.91770 0.77439 0.77170 0.86245 0.87908 0.90847 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.06 6.05 -26.73 -0.16 -1.22 16 3 C 0.14 1.59 5.67 -4.04 -0.02 1.57 16 4 N -0.75 -9.84 5.56 -65.23 -0.36 -10.20 16 5 C 0.70 12.73 8.40 -86.92 -0.73 12.00 16 6 O -0.58 -12.94 13.73 5.29 0.07 -12.87 16 7 N -0.67 -12.23 5.02 -14.07 -0.07 -12.30 16 8 C 0.03 0.74 6.32 -83.52 -0.53 0.22 16 9 C -0.08 -1.80 8.61 -39.79 -0.34 -2.15 16 10 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 11 C 0.11 2.77 5.55 -106.80 -0.59 2.18 16 12 C -0.46 -11.83 9.02 -37.86 -0.34 -12.18 16 13 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 14 C 0.07 1.70 5.42 -17.34 -0.09 1.61 16 15 N -0.81 -20.69 10.59 55.54 0.59 -20.10 16 16 Si 0.92 18.66 29.56 -169.99 -5.03 13.64 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.14 -3.45 8.38 -39.23 -0.33 -3.78 16 21 C -0.02 -0.56 6.30 -39.72 -0.25 -0.81 16 22 Cl -0.12 -2.35 27.92 -51.86 -1.45 -3.80 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 3.90 8.49 -40.82 -0.35 3.55 16 31 H 0.39 6.06 8.07 -40.82 -0.33 5.73 16 32 H 0.12 2.80 6.18 -52.49 -0.32 2.48 16 33 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 35 H 0.14 3.82 6.13 -52.49 -0.32 3.50 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -29.46 313.14 -9.18 -38.64 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.25 Total: 10.79 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.41 Total: -8.52 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.16 Total: -42.60 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.45 Total: -3.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.46 -9.18 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455744959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.661 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds