Wall clock time and date at job start Tue Mar 31 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 C 1.50694 * 109.47071 * 240.00164 * 2 1 3 5 5 H 1.07998 * 120.00386 * 239.99514 * 4 2 1 6 6 C 1.37888 * 119.99936 * 59.99896 * 4 2 1 7 7 N 1.31512 * 119.99688 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99809 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47053 * 90.00229 * 8 6 4 10 10 H 1.48504 * 109.46666 * 210.00002 * 8 6 4 11 11 H 1.48503 * 109.47280 * 329.99988 * 8 6 4 12 12 C 1.53001 * 109.47375 * 120.00118 * 2 1 3 13 13 N 1.46502 * 109.47034 * 299.99995 * 12 2 1 14 14 C 1.34778 * 119.99959 * 179.97438 * 13 12 2 15 15 O 1.21524 * 119.99718 * 359.97438 * 14 13 12 16 16 C 1.48082 * 120.00009 * 180.02562 * 14 13 12 17 17 N 1.32778 * 119.73679 * 359.97438 * 16 14 13 18 18 C 1.31462 * 121.65356 * 180.02562 * 17 16 14 19 19 C 1.38650 * 120.94089 * 0.02562 * 18 17 16 20 20 C 1.38512 * 119.37361 * 0.27958 * 19 18 17 21 21 C 1.38800 * 118.47665 * 359.43086 * 20 19 18 22 22 Cl 1.73603 * 120.48816 * 180.26404 * 21 20 19 23 23 H 1.09004 * 109.47214 * 299.99328 * 1 2 3 24 24 H 1.08994 * 109.47654 * 59.99610 * 1 2 3 25 25 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47099 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47663 * 300.00389 * 3 2 1 28 28 H 1.09004 * 109.47017 * 60.00545 * 3 2 1 29 29 H 0.97003 * 119.99619 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46905 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46807 * 60.00003 * 12 2 1 32 32 H 0.96994 * 119.99943 * 0.02562 * 13 12 2 33 33 H 1.07995 * 119.52996 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.30915 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.75888 * 179.72452 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4871 -0.1399 -5.1120 11 1 3.6308 -1.7564 -3.7120 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5749 -1.4800 3.7809 16 6 1.3829 0.2063 4.8786 17 7 0.6203 1.2856 4.7508 18 6 0.1616 1.9343 5.7982 19 6 0.4600 1.5124 7.0848 20 6 1.2576 0.3946 7.2655 21 6 1.7231 -0.2748 6.1422 22 17 2.7209 -1.6858 6.3081 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.7094 1.1620 -3.4843 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.9938 0.7577 2.3564 33 1 -0.4564 2.8082 5.6545 34 1 0.0780 2.0533 7.9381 35 1 1.5077 0.0490 8.2577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458012943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:56 Heat of formation + Delta-G solvation = -4.327450 kcal Electronic energy + Delta-G solvation = -19691.364611 eV Core-core repulsion = 16522.552724 eV Total energy + Delta-G solvation = -3168.811886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65328 -38.73023 -36.64880 -36.24639 -33.43313 -32.65990 -31.42856 -30.63704 -26.03877 -25.66381 -25.22246 -24.11490 -23.49348 -20.59109 -18.80550 -18.07706 -17.07540 -16.47246 -15.83049 -15.23228 -15.22409 -14.84511 -14.56185 -13.94095 -13.80796 -13.28887 -12.87857 -12.64087 -12.56511 -12.13452 -12.06485 -11.33244 -11.32849 -11.13804 -10.83099 -10.65665 -10.33973 -10.22054 -10.12175 -10.10659 -9.58102 -9.38894 -9.16720 -9.11562 -8.74088 -8.40670 -8.25797 -5.98264 -4.08302 0.39316 0.79803 1.98213 2.86889 3.30948 3.37700 3.40453 3.47975 3.76905 4.11903 4.42303 4.42954 4.58591 4.67790 4.97556 5.21510 5.28399 5.58334 5.61475 6.12946 6.26880 6.35827 6.56620 6.80106 6.91327 6.98874 7.05988 7.07385 7.39287 7.46113 7.61121 7.73388 8.05748 8.09284 8.19363 8.42072 8.65805 8.92227 9.57193 11.03108 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.004092 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.735140 B = 6840.548401 C = 7559.221681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.692 5.692 14 C 0.550 3.450 15 O -0.524 6.524 16 C 0.098 3.902 17 N -0.442 5.442 18 C 0.100 3.900 19 C -0.146 4.146 20 C -0.078 4.078 21 C -0.044 4.044 22 Cl -0.016 7.016 23 H 0.008 0.992 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.008 0.992 29 H 0.259 0.741 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.408 0.592 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 3.176 19.178 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.400 6.400 16 C -0.041 4.041 17 N -0.154 5.154 18 C -0.060 4.060 19 C -0.166 4.166 20 C -0.104 4.104 21 C -0.074 4.074 22 Cl 0.013 6.987 23 H 0.027 0.973 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.897 2.712 18.204 18.502 hybrid contribution 0.245 -0.367 0.086 0.450 sum -1.652 2.345 18.290 18.514 Atomic orbital electron populations 1.21830 0.97690 0.99160 1.00225 1.18361 0.92888 0.92822 0.90412 1.21830 0.98526 0.98325 1.00226 1.20981 1.31463 1.12075 0.89865 0.92422 1.24878 0.94892 0.94910 0.98813 1.69813 1.36721 1.22688 1.23163 0.86577 0.79317 0.79372 0.82628 1.20743 1.21298 1.19912 1.21821 0.98312 0.95898 0.83174 1.46209 1.51226 1.31578 1.05212 1.17768 0.81687 0.84376 0.82958 1.90850 1.37778 1.25281 1.86135 1.21425 0.96159 0.93279 0.93287 1.67791 1.07575 1.05361 1.34651 1.22979 0.96762 0.98606 0.87658 1.22360 0.98118 0.96678 0.99443 1.21580 0.95895 0.94590 0.98378 1.22044 0.97789 0.93076 0.94520 1.98430 1.66170 1.36409 1.97677 0.97289 0.89595 0.95491 0.95482 0.89597 0.97280 0.93043 0.92390 0.92390 0.75492 0.81385 0.83482 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.82 9.35 55.43 0.52 -23.30 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 13 N -0.69 -13.37 4.95 -61.17 -0.30 -13.67 16 14 C 0.55 10.33 7.80 -12.22 -0.10 10.23 16 15 O -0.52 -10.91 13.94 5.34 0.07 -10.83 16 16 C 0.10 1.52 6.75 -82.98 -0.56 0.96 16 17 N -0.44 -6.11 9.54 -9.78 -0.09 -6.21 16 18 C 0.10 0.96 11.18 -17.56 -0.20 0.76 16 19 C -0.15 -1.11 10.11 -39.33 -0.40 -1.51 16 20 C -0.08 -0.72 9.98 -39.27 -0.39 -1.11 16 21 C -0.04 -0.58 6.37 -38.93 -0.25 -0.83 16 22 Cl -0.02 -0.23 26.04 -51.86 -1.35 -1.58 16 23 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 24 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.41 7.57 5.49 -40.82 -0.22 7.34 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -29.41 305.35 -7.39 -36.80 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.07 Total: 3.24 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.75 Total: -4.91 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.12 Total: -43.17 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.35 Total: -1.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.41 -7.39 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.473 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds