Wall clock time and date at job start Tue Mar 31 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00202 * 2 1 4 4 C 1.46902 * 111.00101 * 123.95313 * 2 1 3 5 5 H 1.09003 * 109.46797 * 299.99994 * 4 2 1 6 6 C 1.50696 * 109.47176 * 179.97438 * 4 2 1 7 7 O 1.21288 * 120.00279 * 340.00472 * 6 4 2 8 8 N 1.34777 * 119.99735 * 159.99642 * 6 4 2 9 9 C 1.37105 * 119.99904 * 179.97438 * 8 6 4 10 10 H 1.07991 * 119.99780 * 0.02562 * 9 8 6 11 11 C 1.38954 * 119.99815 * 179.72596 * 9 8 6 12 12 N 1.31412 * 119.99962 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99686 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46935 * 60.00256 * 13 11 9 15 15 H 1.48495 * 109.46983 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47384 * 300.00256 * 13 11 9 17 17 C 1.50700 * 109.46939 * 59.99669 * 4 2 1 18 18 C 1.38237 * 119.98446 * 39.73218 * 17 4 2 19 19 C 1.38218 * 120.00892 * 179.72613 * 18 17 4 20 20 C 1.38347 * 119.98795 * 0.54098 * 19 18 17 21 21 Cl 1.73602 * 120.01435 * 179.70547 * 20 19 18 22 22 C 1.38356 * 119.97687 * 359.73090 * 20 19 18 23 23 C 1.38217 * 119.98064 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47025 * 300.00424 * 1 2 3 25 25 H 1.09005 * 109.46926 * 59.99738 * 1 2 3 26 26 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47099 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46985 * 300.00067 * 3 2 1 29 29 H 1.09000 * 109.47186 * 59.99537 * 3 2 1 30 30 H 0.97005 * 120.00189 * 0.02562 * 8 6 4 31 31 H 0.97000 * 119.99308 * 179.97438 * 12 11 9 32 32 H 1.07997 * 119.99534 * 359.97438 * 18 17 4 33 33 H 1.08005 * 120.00956 * 180.26982 * 19 18 17 34 34 H 1.07993 * 120.01316 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.99340 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6459 -0.3200 2.0688 6 6 3.5019 -0.7440 1.1039 7 8 4.0816 -0.4822 0.0712 8 7 4.2049 -1.0152 2.2213 9 6 5.5754 -0.9958 2.1906 10 1 6.0916 -0.7628 1.2711 11 6 6.3002 -1.2698 3.3440 12 7 5.6719 -1.5480 4.4642 13 14 8.1675 -1.2426 3.3023 14 1 8.6339 0.1080 2.8978 15 1 8.6975 -1.5653 4.6513 16 1 8.6555 -2.2482 2.3245 17 6 1.5121 -2.1907 1.0506 18 6 1.4549 -2.8272 -0.1752 19 6 1.0171 -4.1358 -0.2549 20 6 0.6256 -4.8049 0.8909 21 17 0.0683 -6.4460 0.7906 22 6 0.6777 -4.1656 2.1167 23 6 1.1214 -2.8590 2.1959 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.0851 1.3423 -0.0005 28 1 1.6459 1.8948 -0.8901 29 1 1.6459 1.8948 0.8899 30 1 3.7412 -1.2249 3.0472 31 1 6.1780 -1.7397 5.2693 32 1 1.7562 -2.3032 -1.0702 33 1 0.9766 -4.6345 -1.2121 34 1 0.3718 -4.6872 3.0115 35 1 1.1626 -2.3598 3.1528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514797199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:40 Heat of formation + Delta-G solvation = -7.326486 kcal Electronic energy + Delta-G solvation = -20011.035695 eV Core-core repulsion = 16842.093761 eV Total energy + Delta-G solvation = -3168.941934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87720 -38.17593 -36.50662 -35.98977 -33.90829 -31.74387 -30.92109 -30.85581 -27.60079 -26.82811 -24.78736 -22.80486 -22.22567 -21.26462 -19.06790 -17.91329 -17.02808 -16.30713 -15.61409 -15.50244 -14.75394 -14.38655 -14.29220 -13.91175 -13.59403 -13.40097 -13.26503 -13.21130 -12.66794 -12.15668 -12.03213 -11.81424 -11.54490 -11.40480 -11.24312 -11.18762 -11.04492 -10.83630 -10.66682 -10.47196 -10.25926 -9.50266 -8.85839 -8.79118 -8.18429 -8.01292 -7.90510 -6.46636 -3.87159 1.27872 1.50213 2.22521 3.16899 3.23757 3.27769 3.68255 3.90366 3.99313 4.24629 4.90769 4.96371 5.06123 5.09191 5.26000 5.41742 5.52198 5.55545 5.58806 5.73625 5.81258 5.87119 5.91947 6.01557 6.16520 6.19793 6.36632 6.42132 6.51806 6.74294 6.97860 7.24782 7.35825 7.50597 8.00187 8.55060 9.12222 9.47314 9.98378 10.70635 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.005837 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.649868 B = 4795.899307 C = 6229.472015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.517 5.517 3 C 0.020 3.980 4 C 0.113 3.887 5 H 0.057 0.943 6 C 0.448 3.552 7 O -0.572 6.572 8 N -0.555 5.555 9 C -0.300 4.300 10 H 0.104 0.896 11 C 0.025 3.975 12 N -0.898 5.898 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.060 4.060 18 C -0.071 4.071 19 C -0.117 4.117 20 C -0.037 4.037 21 Cl -0.084 7.084 22 C -0.112 4.112 23 C -0.099 4.099 24 H 0.021 0.979 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.391 0.609 31 H 0.273 0.727 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.452 -2.535 -3.620 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.241 5.241 3 C -0.128 4.128 4 C 0.001 3.999 5 H 0.075 0.925 6 C 0.233 3.767 7 O -0.456 6.456 8 N -0.190 5.190 9 C -0.430 4.430 10 H 0.122 0.878 11 C -0.177 4.177 12 N -0.539 5.539 13 Si 0.757 3.243 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.061 4.061 18 C -0.089 4.089 19 C -0.136 4.136 20 C -0.063 4.063 21 Cl -0.055 7.055 22 C -0.130 4.130 23 C -0.118 4.118 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.853 -2.762 -4.554 12.994 hybrid contribution 0.309 0.048 1.426 1.459 sum -11.544 -2.714 -3.128 12.264 Atomic orbital electron populations 1.22456 0.87798 1.02051 1.00304 1.61631 1.06569 1.14347 1.41529 1.22540 1.03692 0.87217 0.99330 1.20453 0.95497 0.90941 0.93056 0.92528 1.19348 0.86893 0.85277 0.85164 1.90509 1.70260 1.53673 1.31113 1.41858 1.07060 1.60143 1.09954 1.19662 0.80850 1.44890 0.97572 0.87838 1.25268 1.00767 0.96918 0.94746 1.69601 1.36813 1.47007 1.00488 0.85918 0.82041 0.79022 0.77278 1.19840 1.20923 1.19813 1.19664 0.97713 0.95166 0.93593 1.21088 0.96240 0.92971 0.98631 1.21047 1.00336 0.94872 0.97316 1.20902 1.03853 0.86040 0.95548 1.98344 1.88208 1.20305 1.98667 1.20908 1.01098 0.94834 0.96192 1.21015 0.98249 0.94136 0.98401 0.96015 0.91385 0.91333 0.88670 0.91806 0.96504 0.77540 0.91713 0.83881 0.85199 0.85114 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.26 60.06 0.56 0.85 16 2 N -0.52 -8.56 3.93 -246.00 -0.97 -9.53 16 3 C 0.02 0.33 9.19 60.07 0.55 0.88 16 4 C 0.11 2.03 2.08 -70.02 -0.15 1.89 16 5 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 6 C 0.45 10.37 6.14 -10.99 -0.07 10.30 16 7 O -0.57 -15.00 14.29 5.55 0.08 -14.92 16 8 N -0.55 -13.80 5.29 -10.96 -0.06 -13.86 16 9 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 10 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 11 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 12 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 13 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.06 -1.00 3.72 -104.62 -0.39 -1.39 16 18 C -0.07 -1.13 8.41 -39.59 -0.33 -1.46 16 19 C -0.12 -1.67 9.83 -39.55 -0.39 -2.06 16 20 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 21 Cl -0.08 -1.06 28.96 -51.86 -1.50 -2.56 16 22 C -0.11 -1.56 9.83 -39.55 -0.39 -1.94 16 23 C -0.10 -1.49 9.67 -39.59 -0.38 -1.87 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 27 H 0.09 1.89 5.68 -51.93 -0.30 1.59 16 28 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.14 2.39 7.71 -52.49 -0.40 1.98 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.79 8.04 -52.49 -0.42 1.36 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -29.32 313.86 -7.73 -37.05 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.24 Total: 9.95 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.48 Total: -3.36 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.30 Total: -46.65 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.32 -7.73 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514797199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.724 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds