Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38865 * 119.99938 * 2 1 4 4 C 1.38894 * 120.16995 * 354.56623 * 3 2 1 5 5 C 1.38111 * 120.05094 * 179.72369 * 4 3 2 6 6 Cl 1.73605 * 119.80069 * 180.27615 * 5 4 3 7 7 C 1.38756 * 120.39493 * 0.54597 * 5 4 3 8 8 C 1.37684 * 120.33881 * 359.73112 * 7 5 4 9 9 C 1.39773 * 119.94330 * 359.97438 * 8 7 5 10 10 C 1.47370 * 120.19645 * 179.97438 * 9 8 7 11 11 O 1.21606 * 119.99952 * 127.52362 * 10 9 8 12 12 N 1.34777 * 119.99864 * 307.52119 * 10 9 8 13 13 C 1.46499 * 119.99998 * 4.00512 * 12 10 9 14 14 C 1.46501 * 120.00090 * 184.00873 * 12 10 9 15 15 C 1.50697 * 109.47291 * 89.99756 * 14 12 10 16 16 H 1.07998 * 120.00337 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99901 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99818 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00025 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46824 * 90.00667 * 19 17 15 21 21 H 1.48507 * 109.46976 * 210.00234 * 19 17 15 22 22 H 1.48497 * 109.47231 * 330.00674 * 19 17 15 23 23 H 1.09003 * 109.47069 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47077 * 299.99768 * 1 2 3 25 25 H 1.08999 * 109.47403 * 60.00136 * 1 2 3 26 26 H 0.97003 * 119.99938 * 179.72758 * 2 1 3 27 27 H 1.08004 * 119.97475 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.83180 * 179.70196 * 7 5 4 29 29 H 1.08001 * 120.03023 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.46860 * 84.56045 * 13 12 10 31 31 H 1.09009 * 109.46944 * 204.55417 * 13 12 10 32 32 H 1.08996 * 109.47305 * 324.55821 * 13 12 10 33 33 H 1.08997 * 109.47563 * 210.00279 * 14 12 10 34 34 H 1.09004 * 109.46562 * 330.00027 * 14 12 10 35 35 H 0.97001 * 120.00075 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2026 0.0000 4 6 1.4731 2.4048 -0.1137 5 6 2.1656 3.5997 -0.1077 6 17 1.3007 5.0989 -0.2430 7 6 3.5489 3.6089 0.0002 8 6 4.2460 2.4264 0.1081 9 6 3.5589 1.2092 0.1096 10 6 4.2994 -0.0597 0.2242 11 8 3.9880 -0.8707 1.0752 12 7 5.3217 -0.3215 -0.6142 13 6 5.7535 0.6907 -1.5812 14 6 6.0010 -1.6183 -0.5586 15 6 5.3184 -2.5834 -1.4933 16 1 4.4637 -2.2631 -2.0706 17 6 5.7843 -3.8758 -1.6105 18 7 5.1889 -4.7180 -2.4266 19 14 7.2621 -4.4301 -0.6114 20 1 6.8023 -4.9781 0.6899 21 1 7.9987 -5.4811 -1.3585 22 1 8.1599 -3.2720 -0.3713 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.9500 -0.8401 0.0040 27 1 0.3967 2.4054 -0.2028 28 1 4.0817 4.5484 -0.0009 29 1 5.3227 2.4394 0.1914 30 1 6.4510 1.3773 -1.1014 31 1 6.2450 0.2028 -2.4229 32 1 4.8859 1.2452 -1.9387 33 1 7.0417 -1.4965 -0.8586 34 1 5.9593 -2.0069 0.4590 35 1 5.5169 -5.6271 -2.5094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519178270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -8.038976 kcal Electronic energy + Delta-G solvation = -19872.242568 eV Core-core repulsion = 16703.269737 eV Total energy + Delta-G solvation = -3168.972830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18744 -38.19564 -36.67232 -35.53775 -34.78968 -32.63277 -31.03372 -29.80991 -28.38326 -26.15268 -25.84649 -23.80569 -22.04145 -21.52007 -19.13827 -17.52568 -17.01938 -16.79698 -16.20765 -15.61887 -14.96004 -14.57814 -14.37662 -14.22774 -13.97865 -13.75836 -13.25619 -13.17422 -12.57207 -12.46558 -12.23083 -12.01999 -11.90071 -11.65239 -11.50589 -11.42472 -10.99676 -10.93947 -10.56422 -10.20355 -10.06151 -9.61437 -9.20004 -8.74410 -8.63838 -7.78210 -7.42465 -6.14255 -4.13732 1.01052 1.52603 2.03755 3.18133 3.26086 3.32199 3.34163 3.54695 3.65559 3.96825 4.35235 4.78135 4.95011 5.12055 5.15598 5.20083 5.34172 5.43299 5.51838 5.61696 5.66798 5.69108 5.84434 5.99762 6.17946 6.23035 6.32655 6.60149 6.65779 6.89411 7.24629 7.30200 7.54810 7.75460 8.16407 8.40376 8.83009 8.89919 9.45895 10.98840 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.004504 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.511280 B = 6215.306949 C = 6781.740298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.730 5.730 3 C 0.274 3.726 4 C -0.201 4.201 5 C 0.029 3.971 6 Cl -0.078 7.078 7 C -0.182 4.182 8 C -0.030 4.030 9 C -0.195 4.195 10 C 0.557 3.443 11 O -0.541 6.541 12 N -0.588 5.588 13 C 0.081 3.919 14 C 0.214 3.786 15 C -0.531 4.531 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.265 1.265 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.418 0.582 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 17.018 3.162 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.358 5.358 3 C 0.165 3.835 4 C -0.225 4.225 5 C 0.002 3.998 6 Cl -0.049 7.049 7 C -0.203 4.203 8 C -0.049 4.049 9 C -0.203 4.203 10 C 0.344 3.656 11 O -0.420 6.420 12 N -0.318 5.318 13 C -0.062 4.062 14 C 0.093 3.907 15 C -0.570 4.570 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.190 1.190 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.256 0.744 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.019 16.467 3.505 17.880 hybrid contribution 0.791 -0.585 0.280 1.023 sum -5.228 15.882 3.785 17.143 Atomic orbital electron populations 1.21629 0.79967 1.03040 1.00964 1.44623 1.06174 1.06249 1.78731 1.17438 0.89462 0.86438 0.90206 1.20326 1.00187 0.89321 1.12644 1.20681 0.92215 0.86195 1.00738 1.98356 1.77218 1.33041 1.96263 1.20607 0.91672 0.98763 1.09261 1.21011 0.99793 0.90105 0.94009 1.19653 0.92206 0.94837 1.13632 1.17961 0.80371 0.85522 0.81753 1.90758 1.66985 1.48798 1.35440 1.47789 1.33058 1.16701 1.34285 1.21788 0.99735 0.91568 0.93145 1.19727 0.92374 0.80051 0.98537 1.21307 1.16064 0.95235 1.24365 0.90787 1.24850 0.96829 0.96268 0.94961 1.69894 1.40906 1.05657 1.37024 0.86844 0.83139 0.78976 0.80710 1.19874 1.21037 1.19011 0.90332 0.92725 0.92714 0.74373 0.84771 0.85062 0.84675 0.93512 0.90459 0.91796 0.95022 0.94315 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.97 59.85 0.60 1.59 16 2 N -0.73 -11.36 5.71 -65.21 -0.37 -11.74 16 3 C 0.27 4.27 6.64 -83.62 -0.56 3.71 16 4 C -0.20 -2.63 9.07 -39.39 -0.36 -2.99 16 5 C 0.03 0.36 6.32 -39.44 -0.25 0.11 16 6 Cl -0.08 -0.83 28.94 -51.86 -1.50 -2.33 16 7 C -0.18 -2.15 9.80 -39.59 -0.39 -2.54 16 8 C -0.03 -0.40 7.91 -39.21 -0.31 -0.71 16 9 C -0.19 -3.23 4.77 -104.80 -0.50 -3.73 16 10 C 0.56 11.42 6.50 -12.54 -0.08 11.34 16 11 O -0.54 -13.01 15.40 5.27 0.08 -12.93 16 12 N -0.59 -12.02 2.86 -184.26 -0.53 -12.55 16 13 C 0.08 1.27 9.13 59.85 0.55 1.82 16 14 C 0.21 5.13 4.23 -5.19 -0.02 5.11 16 15 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 16 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 19 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.05 0.54 7.73 -51.93 -0.40 0.14 16 26 H 0.42 7.67 6.91 -40.82 -0.28 7.39 16 27 H 0.13 1.52 6.72 -52.48 -0.35 1.16 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.56 6.67 -52.49 -0.35 1.21 16 30 H 0.05 0.59 7.19 -51.93 -0.37 0.21 16 31 H 0.08 1.23 8.03 -51.92 -0.42 0.81 16 32 H 0.06 0.92 6.46 -51.93 -0.34 0.59 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.99 6.80 -51.93 -0.35 0.64 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -32.28 309.15 -7.41 -39.69 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.09 Total: 4.53 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.76 Total: 0.46 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.13 Total: -50.62 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.28 -7.41 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519178270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.650 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds