Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47044 * 2 1 4 4 C 1.37102 * 119.99990 * 262.97560 * 3 2 1 5 5 H 1.08004 * 120.00003 * 142.20788 * 4 3 2 6 6 C 1.38955 * 120.00051 * 322.21503 * 4 3 2 7 7 N 1.31411 * 120.00266 * 157.13194 * 6 4 3 8 8 Si 1.86800 * 119.99507 * 337.13355 * 6 4 3 9 9 H 1.48498 * 109.47329 * 95.20397 * 8 6 4 10 10 H 1.48502 * 109.46925 * 215.20176 * 8 6 4 11 11 H 1.48496 * 109.47383 * 335.20465 * 8 6 4 12 12 C 1.34771 * 120.00526 * 82.97452 * 3 2 1 13 13 O 1.21294 * 120.00247 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99744 * 359.97438 * 12 3 2 15 15 C 1.50706 * 109.47174 * 180.02562 * 14 12 3 16 16 C 1.38229 * 119.60538 * 125.25615 * 15 14 12 17 17 C 1.38606 * 119.17718 * 180.25394 * 16 15 14 18 18 C 1.50700 * 120.79594 * 179.77738 * 17 16 15 19 19 C 1.38777 * 118.40832 * 359.50087 * 17 16 15 20 20 Cl 1.73606 * 120.43186 * 180.23277 * 19 17 16 21 21 C 1.38308 * 119.13936 * 0.25423 * 19 17 16 22 22 N 1.31852 * 119.60018 * 305.00603 * 15 14 12 23 23 H 1.09005 * 109.46733 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47322 * 299.99823 * 1 2 3 25 25 H 1.08995 * 109.47516 * 60.00374 * 1 2 3 26 26 H 1.09002 * 109.47379 * 239.99413 * 2 1 3 27 27 H 1.09000 * 109.47055 * 119.99600 * 2 1 3 28 28 H 0.96997 * 119.99951 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47027 * 60.00214 * 14 12 3 30 30 H 1.08995 * 109.47215 * 300.00261 * 14 12 3 31 31 H 1.07999 * 120.40919 * 0.02849 * 16 15 14 32 32 H 1.08993 * 109.47048 * 269.71560 * 18 17 16 33 33 H 1.09002 * 109.47075 * 149.71447 * 18 17 16 34 34 H 1.09006 * 109.47060 * 29.71636 * 18 17 16 35 35 H 1.07997 * 119.62962 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9791 -1.1784 5 1 2.1620 3.0228 -1.3459 6 6 3.0390 1.2423 -2.1574 7 7 2.9965 1.6317 -3.4117 8 14 3.9806 -0.3020 -1.6903 9 1 3.1112 -1.4900 -1.8856 10 1 5.1866 -0.4249 -2.5480 11 1 4.3925 -0.2189 -0.2660 12 6 2.1083 2.0642 1.1583 13 8 2.5122 3.2079 1.1582 14 6 1.7061 1.4072 2.4536 15 6 1.9000 2.3775 3.5904 16 6 0.8417 2.6631 4.4325 17 6 1.0284 3.5607 5.4719 18 6 -0.1016 3.9024 6.4086 19 6 2.2824 4.1329 5.6329 20 17 2.5763 5.2592 6.9209 21 6 3.2950 3.7945 4.7536 22 7 3.0785 2.9399 3.7728 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.4543 1.1176 -4.0950 29 1 2.3230 0.5242 2.6200 30 1 0.6578 1.1135 2.4019 31 1 -0.1198 2.1953 4.2801 32 1 -0.6491 4.7608 6.0195 33 1 0.3020 4.1442 7.3919 34 1 -0.7750 3.0493 6.4920 35 1 4.2741 4.2347 4.8719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528175355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = 0.723851 kcal Electronic energy + Delta-G solvation = -19751.505194 eV Core-core repulsion = 16582.912348 eV Total energy + Delta-G solvation = -3168.592846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40940 -38.64265 -36.70311 -35.17227 -33.92662 -32.67603 -32.01915 -29.71478 -28.20930 -27.89563 -24.66604 -23.25076 -22.89191 -21.40239 -18.77681 -17.02042 -16.79729 -16.61281 -16.11689 -15.69721 -15.26157 -14.55626 -14.26092 -13.86048 -13.46033 -13.22230 -13.08562 -12.86774 -12.75434 -12.63398 -12.31869 -12.25410 -11.95346 -11.65409 -11.39919 -11.30505 -11.21356 -11.02355 -10.65455 -10.10774 -9.83754 -9.48193 -9.30928 -9.04075 -8.79491 -8.39213 -7.70584 -6.36076 -3.91713 0.99086 1.22020 2.00281 3.05265 3.24982 3.31255 3.70356 3.78771 4.18267 4.35064 4.45705 4.54314 4.63348 4.91753 5.03277 5.21646 5.27699 5.36492 5.46285 5.52150 5.58124 5.63141 5.72394 5.85531 5.90206 5.94705 6.06180 6.08687 6.24176 6.40628 6.57664 6.73490 7.59100 8.10845 8.32691 8.56184 9.02209 9.36396 9.82856 10.76320 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.004250 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.856675 B = 6586.989186 C = 6988.180972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.469 5.469 4 C -0.312 4.312 5 H 0.103 0.897 6 C 0.061 3.939 7 N -0.865 5.865 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.474 3.526 13 O -0.546 6.546 14 C -0.097 4.097 15 C 0.169 3.831 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.118 4.118 19 C -0.104 4.104 20 Cl -0.066 7.066 21 C 0.125 3.875 22 N -0.438 5.438 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.273 0.727 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 -2.089 18.440 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.192 5.192 4 C -0.439 4.439 5 H 0.121 0.879 6 C -0.145 4.145 7 N -0.502 5.502 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.187 1.187 12 C 0.261 3.739 13 O -0.426 6.426 14 C -0.138 4.138 15 C 0.031 3.969 16 C -0.183 4.183 17 C -0.044 4.044 18 C -0.174 4.174 19 C -0.133 4.133 20 Cl -0.037 7.037 21 C -0.034 4.034 22 N -0.147 5.147 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.112 -1.633 17.757 18.550 hybrid contribution -0.077 -0.601 0.638 0.880 sum -5.189 -2.234 18.394 19.242 Atomic orbital electron populations 1.22155 0.96398 1.00993 1.02588 1.21798 0.94563 0.85897 1.01595 1.43736 1.57811 1.11442 1.06203 1.18993 1.36902 0.98485 0.89486 0.87923 1.25342 0.96261 0.98129 0.94724 1.69768 1.40337 1.40321 0.99741 0.87032 0.80394 0.82818 0.79842 1.20280 1.21379 1.18698 1.19809 0.82350 0.87999 0.83707 1.90598 1.48072 1.18006 1.85905 1.20813 1.03455 0.97587 0.91963 1.20892 0.88616 0.93812 0.93575 1.21828 1.00531 1.00041 0.95893 1.20110 0.93810 0.94497 0.95999 1.20858 0.95699 1.02685 0.98158 1.21983 0.96509 0.99222 0.95545 1.98340 1.96049 1.60236 1.49099 1.22799 0.98404 0.93597 0.88604 1.67701 1.23638 1.07220 1.16129 0.92638 0.93084 0.91426 0.90604 0.92315 0.91687 0.87930 0.88251 0.84095 0.90138 0.90609 0.90690 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.11 37.16 0.38 -2.20 16 2 C 0.09 1.64 4.46 -4.05 -0.02 1.63 16 3 N -0.47 -11.25 2.18 -114.81 -0.25 -11.50 16 4 C -0.31 -8.86 9.35 -14.93 -0.14 -9.00 16 5 H 0.10 3.30 7.92 -52.48 -0.42 2.89 16 6 C 0.06 1.69 5.24 -17.47 -0.09 1.60 16 7 N -0.87 -25.17 13.96 55.50 0.77 -24.39 16 8 Si 0.87 20.62 25.11 -169.99 -4.27 16.35 16 9 H -0.28 -5.99 6.67 56.52 0.38 -5.62 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.47 11.03 7.50 -10.99 -0.08 10.95 16 13 O -0.55 -15.06 15.21 5.55 0.08 -14.98 16 14 C -0.10 -1.65 4.71 -29.03 -0.14 -1.78 16 15 C 0.17 2.85 5.76 -82.58 -0.48 2.37 16 16 C -0.16 -2.17 9.42 -39.45 -0.37 -2.54 16 17 C -0.04 -0.44 5.92 -104.29 -0.62 -1.06 16 18 C -0.12 -1.04 9.69 36.01 0.35 -0.69 16 19 C -0.10 -1.39 6.34 -39.36 -0.25 -1.64 16 20 Cl -0.07 -0.74 27.48 -51.86 -1.43 -2.16 16 21 C 0.12 1.93 10.99 -17.50 -0.19 1.73 16 22 N -0.44 -8.16 9.22 -9.44 -0.09 -8.25 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.71 6.38 -51.93 -0.33 0.38 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.58 3.72 -51.93 -0.19 1.39 16 27 H 0.06 0.95 6.74 -51.93 -0.35 0.60 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.10 1.57 7.42 -51.93 -0.39 1.18 16 30 H 0.10 1.34 6.07 -51.93 -0.32 1.02 16 31 H 0.14 1.44 7.95 -52.49 -0.42 1.02 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.63 7.03 -51.93 -0.37 0.26 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -33.71 305.66 -6.26 -39.97 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.04 Total: 0.99 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.65 Total: -0.64 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.44 Total: -44.14 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.27 Total: 16.35 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.43 Total: -2.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.71 -6.26 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528175355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.692 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds