Wall clock time and date at job start Tue Mar 31 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46912 * 2 1 4 4 C 1.50701 * 109.46826 * 119.99962 * 2 1 3 5 5 H 1.07996 * 120.00276 * 120.00587 * 4 2 1 6 6 C 1.37882 * 119.99767 * 300.27324 * 4 2 1 7 7 N 1.31507 * 120.00020 * 359.73065 * 6 4 2 8 8 Si 1.86804 * 119.99757 * 179.72693 * 6 4 2 9 9 H 1.48500 * 109.47103 * 59.99994 * 8 6 4 10 10 H 1.48497 * 109.46945 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46953 * 300.00406 * 8 6 4 12 12 N 1.46502 * 109.47541 * 239.99864 * 2 1 3 13 13 C 1.34774 * 119.99837 * 84.99656 * 12 2 1 14 14 O 1.21892 * 120.00047 * 0.02562 * 13 12 2 15 15 N 1.33569 * 120.00209 * 179.97438 * 13 12 2 16 16 C 1.33186 * 120.00335 * 174.67975 * 15 13 12 17 17 N 1.33669 * 125.23474 * 5.37738 * 16 15 13 18 18 H 0.96998 * 122.81386 * 0.02562 * 17 16 15 19 19 N 1.37946 * 114.37263 * 179.83250 * 17 16 15 20 20 C 1.27977 * 115.11729 * 0.45728 * 19 17 16 21 21 C 1.50695 * 125.04974 * 179.77804 * 20 19 17 22 22 C 1.53001 * 117.50363 * 8.59250 * 21 20 19 23 23 C 1.52998 * 60.00138 * 252.51109 * 22 21 20 24 24 S 1.70869 * 125.23610 * 185.67576 * 16 15 13 25 25 H 1.08999 * 109.46951 * 60.00384 * 1 2 3 26 26 H 1.09003 * 109.46485 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47195 * 299.99892 * 1 2 3 28 28 H 0.97010 * 119.99840 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99828 * 265.00496 * 12 2 1 30 30 H 1.09002 * 115.55193 * 154.30321 * 21 20 19 31 31 H 1.09003 * 117.49500 * 359.97438 * 22 21 20 32 32 H 1.08996 * 117.49711 * 145.02298 * 22 21 20 33 33 H 1.09004 * 117.50215 * 252.50830 * 23 22 21 34 34 H 1.09000 * 117.52166 * 107.47371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6945 -0.2426 2.4828 7 7 0.9384 0.8266 2.6033 8 14 2.3108 -1.1277 4.0080 9 1 3.7958 -1.1283 4.0138 10 1 1.8108 -0.4311 5.2204 11 1 1.8152 -2.5276 4.0021 12 7 2.0185 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1645 -2.4117 15 7 2.5930 -0.6478 -3.4475 16 6 2.6201 -0.0135 -4.6183 17 7 2.3246 1.2770 -4.8034 18 1 2.0611 1.8650 -4.0784 19 7 2.4299 1.7032 -6.1111 20 6 2.7837 0.8030 -6.9491 21 6 2.9625 1.0210 -8.4294 22 6 2.8993 2.4604 -8.9444 23 6 1.7454 1.4960 -9.2256 24 16 3.0311 -0.7257 -6.1161 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7004 1.1555 3.4844 29 1 2.2491 -1.6318 -1.1525 30 1 3.6531 0.3387 -8.9251 31 1 2.7280 3.2497 -8.2123 32 1 3.5486 2.7253 -9.7788 33 1 1.6354 1.1264 -10.2452 34 1 0.8152 1.6503 -8.6787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549610975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:19 Heat of formation + Delta-G solvation = 77.117018 kcal Electronic energy + Delta-G solvation = -19048.521911 eV Core-core repulsion = 15917.578179 eV Total energy + Delta-G solvation = -3130.943732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83705 -39.09346 -37.57176 -35.19570 -33.79244 -32.41512 -30.86595 -28.75791 -25.98598 -25.23350 -24.58733 -22.82796 -21.81445 -20.21871 -19.78164 -19.02109 -17.92988 -16.46084 -16.06505 -15.81687 -15.77342 -15.36305 -14.82587 -14.58688 -14.23988 -13.32048 -12.87625 -12.70687 -12.41296 -12.18292 -11.91731 -11.67968 -11.46786 -11.11697 -10.99271 -10.95114 -10.75280 -10.68126 -10.40292 -10.25474 -10.17288 -9.82757 -9.05710 -8.98484 -8.55192 -8.31579 -7.70164 -6.10956 -4.19820 0.44566 0.80373 1.15121 1.47847 2.39472 3.28149 3.32375 3.34561 3.37193 3.96869 4.11069 4.18898 4.31173 4.38514 4.42822 4.53215 5.07736 5.21359 5.22925 5.35349 5.59356 5.69260 5.72500 6.59626 6.84562 6.99336 7.14802 7.25241 7.50529 7.54470 7.59950 7.73420 7.93585 8.15908 8.72243 8.81346 9.31368 9.49719 10.95276 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.003181 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.930073 B = 8800.784700 C = 9078.923240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.273 3.727 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.663 3.337 14 O -0.633 6.633 15 N -0.604 5.604 16 C 0.353 3.647 17 N -0.498 5.498 18 H 0.461 0.539 19 N -0.227 5.227 20 C 0.066 3.934 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.154 4.154 24 S 0.184 5.816 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.265 0.735 29 H 0.396 0.604 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -1.223 -24.593 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.327 5.327 13 C 0.360 3.640 14 O -0.516 6.516 15 N -0.362 5.362 16 C -0.030 4.030 17 N -0.246 5.246 18 H 0.324 0.676 19 N -0.042 5.042 20 C -0.233 4.233 21 C -0.111 4.111 22 C -0.191 4.191 23 C -0.193 4.193 24 S 0.419 5.581 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.157 0.843 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.629 -1.162 -24.116 24.416 hybrid contribution -0.118 0.504 1.945 2.012 sum 3.511 -0.658 -22.172 22.458 Atomic orbital electron populations 1.22090 0.98374 0.99224 1.00822 1.18768 0.91007 0.93856 0.79298 0.93358 1.21194 1.32433 1.13395 0.90179 0.91933 1.24888 0.94783 0.94986 0.99054 1.69896 1.35831 1.22534 1.23999 0.86460 0.79164 0.79616 0.81584 1.20135 1.21114 1.20074 1.45608 1.64797 1.13746 1.08505 1.17155 0.78701 0.84273 0.83902 1.90451 1.58505 1.17393 1.85298 1.69445 1.34465 1.36025 0.96279 1.24646 0.91663 0.85526 1.01123 1.48171 1.60755 1.09438 1.06195 0.67581 1.73957 1.15251 1.24560 0.90465 1.27151 1.03119 0.93369 0.99701 1.20427 1.04860 1.01455 0.84396 1.23113 1.01320 0.91538 1.03156 1.23141 0.93036 1.02319 1.00760 1.84733 1.73562 1.08512 0.91274 0.96835 0.95349 0.88956 0.92513 0.77030 0.84321 0.87390 0.87440 0.87271 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.26 37.16 0.34 -3.51 16 2 C 0.27 7.43 2.56 -69.08 -0.18 7.25 16 3 H 0.05 1.49 7.57 -51.93 -0.39 1.10 16 4 C -0.53 -14.87 8.73 -34.44 -0.30 -15.17 16 5 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.61 11.31 55.43 0.63 -24.99 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.68 -16.29 5.07 -60.07 -0.30 -16.59 16 13 C 0.66 15.55 8.42 -87.99 -0.74 14.81 16 14 O -0.63 -15.96 13.21 5.02 0.07 -15.90 16 15 N -0.60 -12.03 10.59 -18.27 -0.19 -12.23 16 16 C 0.35 5.89 7.94 -89.32 -0.71 5.18 16 17 N -0.50 -8.28 6.57 29.39 0.19 -8.08 16 18 H 0.46 8.75 5.82 -184.20 -1.07 7.68 16 19 N -0.23 -2.99 11.55 33.21 0.38 -2.61 16 20 C 0.07 0.68 7.19 -13.89 -0.10 0.58 16 21 C -0.09 -0.56 6.31 -91.77 -0.58 -1.14 16 22 C -0.15 -0.85 10.12 -26.73 -0.27 -1.12 16 23 C -0.15 -0.80 10.23 -26.73 -0.27 -1.08 16 24 S 0.18 2.03 23.13 -107.50 -2.49 -0.46 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.59 6.06 -51.93 -0.31 2.27 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.40 8.67 8.64 -40.82 -0.35 8.32 16 30 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -32.74 309.21 -9.60 -42.33 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.62 Total: 10.07 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.90 Total: 7.54 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.71 Total: -64.50 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.07 Total: -15.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.74 -9.60 -42.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549610975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.449 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds