Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46912 * 2 1 4 4 C 1.50701 * 109.46826 * 119.99962 * 2 1 3 5 5 H 1.07996 * 120.00276 * 120.00587 * 4 2 1 6 6 C 1.37882 * 119.99767 * 300.27324 * 4 2 1 7 7 N 1.31507 * 120.00020 * 359.73065 * 6 4 2 8 8 Si 1.86804 * 119.99757 * 179.72693 * 6 4 2 9 9 H 1.48500 * 109.47103 * 59.99994 * 8 6 4 10 10 H 1.48497 * 109.46945 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46953 * 300.00406 * 8 6 4 12 12 N 1.46502 * 109.47541 * 239.99864 * 2 1 3 13 13 C 1.34774 * 119.99837 * 84.99656 * 12 2 1 14 14 O 1.21892 * 120.00047 * 0.02562 * 13 12 2 15 15 N 1.33569 * 120.00209 * 179.97438 * 13 12 2 16 16 C 1.33186 * 120.00335 * 174.67975 * 15 13 12 17 17 N 1.33669 * 125.23474 * 5.37738 * 16 15 13 18 18 H 0.96998 * 122.81386 * 0.02562 * 17 16 15 19 19 N 1.37946 * 114.37263 * 179.83250 * 17 16 15 20 20 C 1.27977 * 115.11729 * 0.45728 * 19 17 16 21 21 C 1.50695 * 125.04974 * 179.77804 * 20 19 17 22 22 C 1.53001 * 117.50363 * 8.59250 * 21 20 19 23 23 C 1.52998 * 60.00138 * 252.51109 * 22 21 20 24 24 S 1.70869 * 125.23610 * 185.67576 * 16 15 13 25 25 H 1.08999 * 109.46951 * 60.00384 * 1 2 3 26 26 H 1.09003 * 109.46485 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47195 * 299.99892 * 1 2 3 28 28 H 0.97010 * 119.99840 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99828 * 265.00496 * 12 2 1 30 30 H 1.09002 * 115.55193 * 154.30321 * 21 20 19 31 31 H 1.09003 * 117.49500 * 359.97438 * 22 21 20 32 32 H 1.08996 * 117.49711 * 145.02298 * 22 21 20 33 33 H 1.09004 * 117.50215 * 252.50830 * 23 22 21 34 34 H 1.09000 * 117.52166 * 107.47371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6945 -0.2426 2.4828 7 7 0.9384 0.8266 2.6033 8 14 2.3108 -1.1277 4.0080 9 1 3.7958 -1.1283 4.0138 10 1 1.8108 -0.4311 5.2204 11 1 1.8152 -2.5276 4.0021 12 7 2.0185 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1645 -2.4117 15 7 2.5930 -0.6478 -3.4475 16 6 2.6201 -0.0135 -4.6183 17 7 2.3246 1.2770 -4.8034 18 1 2.0611 1.8650 -4.0784 19 7 2.4299 1.7032 -6.1111 20 6 2.7837 0.8030 -6.9491 21 6 2.9625 1.0210 -8.4294 22 6 2.8993 2.4604 -8.9444 23 6 1.7454 1.4960 -9.2256 24 16 3.0311 -0.7257 -6.1161 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7004 1.1555 3.4844 29 1 2.2491 -1.6318 -1.1525 30 1 3.6531 0.3387 -8.9251 31 1 2.7280 3.2497 -8.2123 32 1 3.5486 2.7253 -9.7788 33 1 1.6354 1.1264 -10.2452 34 1 0.8152 1.6503 -8.6787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549610975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = 52.746738 kcal Electronic energy + Delta-G solvation = -19049.578686 eV Core-core repulsion = 15917.578179 eV Total energy + Delta-G solvation = -3132.000506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11771 -40.57999 -38.32892 -37.00921 -35.27690 -34.41853 -32.18547 -30.65786 -27.44315 -27.14394 -25.59171 -23.52528 -23.22541 -21.79555 -21.02990 -20.30235 -19.38021 -18.09244 -17.53768 -17.21287 -16.88789 -16.74820 -16.58478 -15.87636 -15.43050 -15.08547 -14.54251 -13.90952 -13.87127 -13.33153 -13.22145 -13.06009 -12.88802 -12.84590 -12.60824 -12.34930 -12.33614 -12.16682 -11.81993 -11.68904 -11.25113 -11.19889 -10.73759 -10.69864 -10.57629 -10.02975 -9.23713 -8.22722 -6.40886 -0.63950 -0.39106 0.08337 0.35456 1.24727 1.41934 1.45246 1.53197 2.25825 2.43525 2.54045 2.87984 3.07340 3.23090 3.69395 3.87495 4.03374 4.15371 4.40296 4.64121 4.81887 4.86357 4.98174 4.99679 5.08238 5.18503 5.31209 5.40325 5.58368 5.62146 5.83701 6.00264 6.04152 6.16601 6.65555 6.90146 7.27546 7.63936 8.84031 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.003181 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.930073 B = 8800.784700 C = 9078.923240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.282 3.718 3 H -0.001 1.001 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.978 3.022 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.263 1.263 12 N -0.685 5.685 13 C 0.659 3.341 14 O -0.667 6.667 15 N -0.630 5.630 16 C 0.326 3.674 17 N -0.510 5.510 18 H 0.449 0.551 19 N -0.255 5.255 20 C 0.083 3.917 21 C -0.100 4.100 22 C -0.152 4.152 23 C -0.143 4.143 24 S 0.279 5.721 25 H 0.008 0.992 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.177 0.823 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -2.919 -27.351 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.179 3.821 3 H 0.017 0.983 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.802 3.198 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.187 1.187 12 N -0.333 5.333 13 C 0.356 3.644 14 O -0.553 6.553 15 N -0.392 5.392 16 C -0.053 4.053 17 N -0.251 5.251 18 H 0.308 0.692 19 N -0.070 5.070 20 C -0.216 4.216 21 C -0.123 4.123 22 C -0.191 4.191 23 C -0.182 4.182 24 S 0.516 5.484 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.240 0.760 30 H 0.195 0.805 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.770 -2.870 -26.993 27.561 hybrid contribution -0.431 1.117 2.405 2.687 sum 4.339 -1.752 -24.588 25.030 Atomic orbital electron populations 1.21901 0.98094 0.99438 0.99555 1.18370 0.91173 0.91694 0.80898 0.98302 1.21486 1.32982 1.13843 0.90742 0.91095 1.25843 0.94684 0.95613 1.02337 1.70042 1.36694 1.23880 1.24888 0.85306 0.78608 0.78716 0.77159 1.19597 1.20664 1.18742 1.45287 1.65906 1.14002 1.08143 1.17518 0.78301 0.83888 0.84730 1.90434 1.60035 1.18790 1.85998 1.69481 1.37741 1.35736 0.96262 1.25684 0.90805 0.86243 1.02561 1.48303 1.59835 1.09329 1.07604 0.69191 1.74155 1.18551 1.25174 0.89150 1.28196 0.99277 0.92840 1.01290 1.20935 1.06730 1.03031 0.81554 1.23207 1.02121 0.90423 1.03347 1.23261 0.91809 1.01417 1.01720 1.84475 1.70493 1.06845 0.86538 0.97313 0.94186 0.90841 0.92315 0.75996 0.80539 0.89624 0.84655 0.84137 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.20 9.26 71.98 0.67 -6.53 16 2 C 0.28 16.11 2.56 44.25 0.11 16.22 16 3 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 4 C -0.55 -31.48 8.73 25.60 0.22 -31.26 16 5 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -54.48 11.31 21.45 0.24 -54.24 16 8 Si 0.98 43.74 29.54 68.60 2.03 45.77 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 12 N -0.69 -34.26 5.07 -462.09 -2.34 -36.61 16 13 C 0.66 32.39 8.42 179.43 1.51 33.90 16 14 O -0.67 -35.82 13.21 -4.96 -0.07 -35.88 16 15 N -0.63 -25.69 10.59 -330.53 -3.50 -29.19 16 16 C 0.33 10.90 7.94 179.89 1.43 12.33 16 17 N -0.51 -17.39 6.57 -60.92 -0.40 -17.79 16 18 H 0.45 18.13 5.82 -214.69 -1.25 16.88 16 19 N -0.25 -6.60 11.55 -48.74 -0.56 -7.17 16 20 C 0.08 1.48 7.19 88.67 0.64 2.12 16 21 C -0.10 -0.85 6.31 -11.54 -0.07 -0.92 16 22 C -0.15 -1.21 10.12 30.59 0.31 -0.90 16 23 C -0.14 -0.97 10.23 30.59 0.31 -0.66 16 24 S 0.28 5.43 23.13 -56.49 -1.31 4.12 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 4.30 6.06 -2.39 -0.01 4.28 16 28 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 29 H 0.41 18.28 8.64 -92.71 -0.80 17.48 16 30 H 0.18 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 1.12 7.85 -2.39 -0.02 1.10 16 32 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.14 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.64 309.21 -1.22 -76.86 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.89 Total: 28.50 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 5.58 Total: 25.62 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -6.57 Total: -144.99 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.07 Total: -35.88 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.31 Total: 4.12 kcal Total: -75.64 -1.22 -76.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549610975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.609 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds