Wall clock time and date at job start Tue Mar 31 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47563 * 2 1 4 4 C 1.50701 * 109.47356 * 239.99532 * 2 1 3 5 5 H 1.08001 * 120.00320 * 239.99871 * 4 2 1 6 6 C 1.37876 * 119.99922 * 60.00563 * 4 2 1 7 7 N 1.31517 * 119.99811 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00249 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46793 * 89.99561 * 8 6 4 10 10 H 1.48495 * 109.46912 * 209.99606 * 8 6 4 11 11 H 1.48493 * 109.46996 * 329.99649 * 8 6 4 12 12 N 1.46507 * 109.47039 * 119.99576 * 2 1 3 13 13 C 1.34774 * 120.00339 * 274.72435 * 12 2 1 14 14 O 1.21893 * 119.99757 * 0.27632 * 13 12 2 15 15 N 1.33569 * 120.00123 * 180.27082 * 13 12 2 16 16 C 1.33185 * 119.99752 * 174.68164 * 15 13 12 17 17 N 1.33665 * 125.23882 * 5.37233 * 16 15 13 18 18 H 0.96998 * 122.81211 * 0.02562 * 17 16 15 19 19 N 1.37938 * 114.37577 * 179.83463 * 17 16 15 20 20 C 1.27979 * 115.12052 * 0.45647 * 19 17 16 21 21 C 1.50700 * 125.05646 * 179.77360 * 20 19 17 22 22 C 1.52995 * 117.49803 * 8.59928 * 21 20 19 23 23 C 1.52998 * 117.50119 * 299.97513 * 21 20 19 24 24 S 1.70870 * 125.23552 * 185.67872 * 16 15 13 25 25 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47365 * 300.00446 * 1 2 3 27 27 H 1.09000 * 109.46747 * 60.00478 * 1 2 3 28 28 H 0.97000 * 120.00193 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99341 * 95.00343 * 12 2 1 30 30 H 1.09000 * 115.54956 * 154.30615 * 21 20 19 31 31 H 1.08996 * 117.50245 * 359.97438 * 22 21 20 32 32 H 1.09007 * 117.49625 * 145.02248 * 22 21 20 33 33 H 1.08994 * 117.50645 * 214.98090 * 23 21 20 34 34 H 1.09008 * 117.49868 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3449 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1119 11 1 3.6309 -1.7567 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 2.1523 -0.0169 2.3558 14 8 1.8624 1.1658 2.4105 15 7 2.6026 -0.6452 3.4451 16 6 2.8357 0.0423 4.5618 17 7 2.5611 1.3380 4.7413 18 1 2.1598 1.8906 4.0524 19 7 2.8924 1.8226 5.9895 20 6 3.4187 0.9669 6.7824 21 6 3.8685 1.2547 8.1916 22 6 3.5019 2.6159 8.7860 23 6 4.9485 2.3211 8.3846 24 16 3.5386 -0.5947 5.9830 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.2490 -1.6317 1.1527 30 1 3.8812 0.3979 8.8652 31 1 2.9358 3.3035 8.1578 32 1 3.2732 2.6548 9.8511 33 1 5.6715 2.1661 9.1854 34 1 5.3341 2.8142 7.4922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549610979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:22 Heat of formation + Delta-G solvation = 77.024607 kcal Electronic energy + Delta-G solvation = -19046.669665 eV Core-core repulsion = 15915.721926 eV Total energy + Delta-G solvation = -3130.947739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83673 -39.09230 -37.57047 -35.19498 -33.79151 -32.41443 -30.86522 -28.75763 -25.98553 -25.23379 -24.58615 -22.82543 -21.81499 -20.21702 -19.77779 -19.02064 -17.92904 -16.47543 -16.04703 -15.83595 -15.72795 -15.40518 -14.83871 -14.56943 -14.23042 -13.32100 -12.87454 -12.70586 -12.40958 -12.16807 -11.91373 -11.70823 -11.45850 -11.12026 -10.98547 -10.91954 -10.82339 -10.62750 -10.40298 -10.25757 -10.17417 -9.82592 -9.04762 -8.98350 -8.55867 -8.31573 -7.69873 -6.11241 -4.20044 0.44688 0.80522 1.15281 1.48028 2.39606 3.26421 3.32562 3.35849 3.37439 3.96175 4.10706 4.21040 4.31403 4.37921 4.42653 4.53331 5.07900 5.21216 5.23299 5.35507 5.59657 5.69350 5.72732 6.59727 6.84978 6.99968 7.15053 7.25482 7.50732 7.54481 7.60072 7.73382 7.93621 8.15846 8.72272 8.81361 9.31383 9.49614 10.95063 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.044992 B = 0.003199 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.185926 B = 8750.867008 C = 8939.911583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.273 3.727 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.663 3.337 14 O -0.633 6.633 15 N -0.604 5.604 16 C 0.353 3.647 17 N -0.498 5.498 18 H 0.461 0.539 19 N -0.227 5.227 20 C 0.066 3.934 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.154 4.154 24 S 0.184 5.816 25 H 0.027 0.973 26 H 0.013 0.987 27 H 0.092 0.908 28 H 0.264 0.736 29 H 0.396 0.604 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -0.430 23.794 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.327 5.327 13 C 0.360 3.640 14 O -0.517 6.517 15 N -0.362 5.362 16 C -0.029 4.029 17 N -0.245 5.245 18 H 0.324 0.676 19 N -0.042 5.042 20 C -0.233 4.233 21 C -0.111 4.111 22 C -0.191 4.191 23 C -0.193 4.193 24 S 0.419 5.581 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.157 0.843 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.614 -0.405 23.356 24.277 hybrid contribution -0.384 0.447 -1.884 1.974 sum 6.230 0.042 21.472 22.357 Atomic orbital electron populations 1.22088 0.98356 0.99245 1.00826 1.18774 0.91035 0.93843 0.79301 0.93365 1.21229 1.32436 1.13285 0.90171 0.91889 1.24892 0.94819 0.94968 0.99069 1.69909 1.35969 1.22484 1.23889 0.86400 0.79226 0.79232 0.81984 1.20476 1.21065 1.19789 1.45610 1.64794 1.13724 1.08534 1.17156 0.78899 0.84186 0.83788 1.90451 1.58389 1.17480 1.85335 1.69447 1.34256 1.34054 0.98470 1.24644 0.92937 0.84857 1.00511 1.48168 1.56034 1.08979 1.11368 0.67584 1.73955 1.13023 1.24553 0.92707 1.27153 1.02234 0.93751 1.00203 1.20425 1.06734 0.95999 0.87975 1.23112 0.98284 0.95850 1.01887 1.23141 0.92221 0.99820 1.04071 1.84734 1.64038 1.08954 1.00349 0.95334 0.96785 0.88992 0.92574 0.77030 0.84324 0.87393 0.87446 0.87269 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.26 37.15 0.34 -3.52 16 2 C 0.27 7.42 2.56 -69.08 -0.18 7.24 16 3 H 0.05 1.49 7.57 -51.93 -0.39 1.09 16 4 C -0.53 -14.84 8.73 -34.44 -0.30 -15.14 16 5 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.60 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.68 -16.28 5.07 -60.07 -0.30 -16.59 16 13 C 0.66 15.55 8.43 -87.99 -0.74 14.80 16 14 O -0.63 -15.96 13.20 5.02 0.07 -15.90 16 15 N -0.60 -12.03 10.59 -18.27 -0.19 -12.23 16 16 C 0.35 5.90 7.94 -89.32 -0.71 5.19 16 17 N -0.50 -8.28 6.57 29.39 0.19 -8.09 16 18 H 0.46 8.75 5.82 -184.20 -1.07 7.68 16 19 N -0.23 -3.00 11.55 33.21 0.38 -2.61 16 20 C 0.07 0.68 7.19 -13.88 -0.10 0.58 16 21 C -0.09 -0.56 6.31 -91.78 -0.58 -1.14 16 22 C -0.15 -0.85 10.12 -26.73 -0.27 -1.12 16 23 C -0.15 -0.81 10.23 -26.73 -0.27 -1.09 16 24 S 0.18 2.03 23.13 -107.50 -2.49 -0.45 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.40 8.67 8.64 -40.82 -0.35 8.32 16 30 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -32.75 309.23 -9.60 -42.34 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.62 Total: 10.07 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.90 Total: 7.54 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.71 Total: -64.50 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.07 Total: -15.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.75 -9.60 -42.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549610979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.366 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds