Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38875 * 119.99625 * 2 1 4 4 C 1.38889 * 120.17107 * 5.63103 * 3 2 1 5 5 C 1.38103 * 120.05244 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.80383 * 180.02562 * 5 4 3 7 7 C 1.38764 * 120.39491 * 0.02562 * 5 4 3 8 8 C 1.37691 * 120.33723 * 359.69962 * 7 5 4 9 9 C 1.39763 * 119.94022 * 0.55662 * 8 7 5 10 10 C 1.47376 * 120.19909 * 179.74524 * 9 8 7 11 11 O 1.21603 * 120.00477 * 174.12447 * 10 9 8 12 12 N 1.34773 * 119.99486 * 354.12530 * 10 9 8 13 13 C 1.46501 * 119.99808 * 179.72304 * 12 10 9 14 14 H 1.08997 * 109.47203 * 35.28314 * 13 12 10 15 15 C 1.52999 * 109.47218 * 275.27397 * 13 12 10 16 16 C 1.50708 * 109.47074 * 155.27706 * 13 12 10 17 17 H 1.08002 * 120.00089 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99969 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00234 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99964 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46938 * 90.00197 * 20 18 16 22 22 H 1.48500 * 109.47261 * 209.99695 * 20 18 16 23 23 H 1.48500 * 109.47253 * 330.00088 * 20 18 16 24 24 H 1.08999 * 109.46922 * 60.00331 * 1 2 3 25 25 H 1.09003 * 109.46655 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47237 * 299.99643 * 1 2 3 27 27 H 0.96998 * 120.00100 * 180.02562 * 2 1 3 28 28 H 1.08003 * 119.97460 * 359.95253 * 4 3 2 29 29 H 1.08004 * 119.82803 * 179.97438 * 7 5 4 30 30 H 1.07998 * 120.02902 * 180.27369 * 8 7 5 31 31 H 0.97001 * 120.00128 * 0.02562 * 12 10 9 32 32 H 1.08997 * 109.46985 * 60.00574 * 15 13 12 33 33 H 1.09006 * 109.46786 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.47192 * 299.99865 * 15 13 12 35 35 H 0.96993 * 120.00354 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1594 1.2027 0.0000 4 6 1.4734 2.4047 0.1178 5 6 2.1664 3.5993 0.1181 6 17 1.3026 5.0978 0.2664 7 6 3.5490 3.6090 0.0005 8 6 4.2457 2.4266 -0.1116 9 6 3.5582 1.2098 -0.1188 10 6 4.2978 -0.0588 -0.2441 11 8 3.7095 -1.1182 -0.1429 12 7 5.6262 -0.0447 -0.4708 13 6 6.3625 -1.3056 -0.5893 14 1 5.7339 -2.0487 -1.0801 15 6 6.7479 -1.8042 0.8049 16 6 7.6096 -1.0844 -1.4061 17 1 7.8313 -0.1027 -1.7981 18 6 8.4669 -2.1353 -1.6539 19 7 8.1968 -3.3308 -1.1770 20 14 10.0122 -1.8612 -2.6669 21 1 11.1327 -1.4837 -1.7683 22 1 10.3578 -3.1110 -3.3907 23 1 9.7748 -0.7710 -3.6469 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 0.3973 2.4051 0.2090 29 1 4.0817 4.5485 0.0013 30 1 5.3221 2.4398 -0.1984 31 1 6.0956 0.8004 -0.5511 32 1 5.8460 -1.9643 1.3956 33 1 7.2954 -2.7427 0.7167 34 1 7.3766 -1.0611 1.2955 35 1 8.7997 -4.0702 -1.3515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570580246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -17.761589 kcal Electronic energy + Delta-G solvation = -19532.722644 eV Core-core repulsion = 16363.328209 eV Total energy + Delta-G solvation = -3169.394434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13616 -38.13552 -36.67189 -35.55941 -34.68700 -32.51084 -31.02237 -29.79382 -28.68222 -25.86609 -25.28452 -23.75382 -21.73761 -21.12219 -19.60534 -18.05222 -17.20875 -16.40586 -15.71724 -15.30666 -14.96659 -14.67327 -14.52527 -14.20865 -13.91550 -13.75659 -13.17064 -13.04533 -12.45456 -12.36401 -12.13121 -11.80797 -11.57897 -11.50220 -11.13019 -10.99647 -10.96676 -10.77629 -10.35612 -10.26598 -10.07890 -9.16406 -9.08452 -8.83286 -8.59597 -8.03580 -7.38863 -6.15606 -4.25074 0.90423 1.53953 2.02206 3.20474 3.23036 3.29974 3.32161 3.62146 4.01783 4.10500 4.35503 4.76164 5.09240 5.11990 5.17072 5.28812 5.33616 5.38801 5.55591 5.61434 5.67732 6.04697 6.21660 6.32518 6.61072 6.78557 6.91600 7.09925 7.30981 7.33272 7.51477 7.65464 7.86421 7.98587 8.13095 8.58262 8.73168 9.04116 9.42492 10.90409 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.004031 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.091902 B = 6944.680795 C = 7798.741659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.726 5.726 3 C 0.282 3.718 4 C -0.210 4.210 5 C 0.036 3.964 6 Cl -0.077 7.077 7 C -0.187 4.187 8 C -0.023 4.023 9 C -0.211 4.211 10 C 0.557 3.443 11 O -0.564 6.564 12 N -0.697 5.697 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.425 0.575 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.390 0.610 32 H 0.015 0.985 33 H 0.091 0.909 34 H 0.027 0.973 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 12.349 2.938 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.171 3.829 4 C -0.234 4.234 5 C 0.008 3.992 6 Cl -0.048 7.048 7 C -0.208 4.208 8 C -0.043 4.043 9 C -0.219 4.219 10 C 0.345 3.655 11 O -0.447 6.447 12 N -0.343 5.343 13 C 0.162 3.838 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.276 0.724 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.224 0.776 32 H 0.034 0.966 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.872 11.399 3.006 17.454 hybrid contribution 1.112 0.439 -0.525 1.306 sum -11.760 11.837 2.480 16.869 Atomic orbital electron populations 1.21643 0.81010 1.02698 1.00856 1.45592 1.05922 1.07627 1.77341 1.17595 0.89625 0.86596 0.89129 1.20383 1.00192 0.89513 1.13270 1.20740 0.92266 0.86232 0.99931 1.98358 1.77248 1.33135 1.96086 1.20629 0.91694 0.98919 1.09552 1.21075 0.99810 0.90450 0.92948 1.19755 0.92270 0.94644 1.15232 1.17952 0.82969 0.87485 0.77089 1.90318 1.67534 1.32431 1.54376 1.46428 1.06767 1.11970 1.69174 1.18803 0.90771 0.80405 0.93811 0.93175 1.22085 0.98559 1.03012 0.96928 1.21207 1.06350 0.96217 1.33572 0.92009 1.24878 0.98168 0.94888 0.95694 1.69894 1.37382 1.00354 1.44440 0.86439 0.82743 0.77763 0.80117 1.20506 1.21060 1.19804 0.92912 0.90569 0.92957 0.72412 0.84827 0.84989 0.84615 0.77638 0.96604 0.89057 0.95388 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.97 59.85 0.60 1.45 16 2 N -0.73 -10.67 5.74 -65.21 -0.37 -11.04 16 3 C 0.28 4.27 6.65 -83.62 -0.56 3.71 16 4 C -0.21 -2.70 9.07 -39.39 -0.36 -3.06 16 5 C 0.04 0.44 6.32 -39.44 -0.25 0.19 16 6 Cl -0.08 -0.83 28.94 -51.86 -1.50 -2.33 16 7 C -0.19 -2.27 9.80 -39.59 -0.39 -2.66 16 8 C -0.02 -0.31 9.52 -39.21 -0.37 -0.69 16 9 C -0.21 -3.44 5.89 -104.80 -0.62 -4.06 16 10 C 0.56 11.16 7.71 -12.54 -0.10 11.06 16 11 O -0.56 -12.69 13.30 5.27 0.07 -12.62 16 12 N -0.70 -14.37 5.02 -56.02 -0.28 -14.66 16 13 C 0.26 6.59 2.56 -69.08 -0.18 6.41 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 15 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 16 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 20 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.47 7.73 -51.93 -0.40 0.07 16 27 H 0.43 7.26 5.34 -40.95 -0.22 7.04 16 28 H 0.13 1.46 6.72 -52.48 -0.35 1.11 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.14 1.60 6.44 -52.49 -0.34 1.26 16 31 H 0.39 6.94 6.60 -40.82 -0.27 6.67 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -29.08 309.10 -8.03 -37.11 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.94 Total: 10.89 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.27 Total: -3.47 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.03 Total: -49.60 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.08 -8.03 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570580246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.348 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds