Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38874 * 119.99737 * 2 1 4 4 C 1.38891 * 120.16914 * 5.63350 * 3 2 1 5 5 C 1.38110 * 120.05142 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 119.80192 * 179.97438 * 5 4 3 7 7 C 1.38764 * 120.39443 * 359.97438 * 5 4 3 8 8 C 1.37690 * 120.33624 * 359.71730 * 7 5 4 9 9 C 1.39772 * 119.94110 * 0.58480 * 8 7 5 10 10 C 1.47377 * 120.19450 * 179.69464 * 9 8 7 11 11 O 1.21606 * 119.99841 * 174.12294 * 10 9 8 12 12 N 1.34778 * 119.99787 * 353.84741 * 10 9 8 13 13 C 1.46502 * 119.99769 * 180.27288 * 12 10 9 14 14 H 1.09004 * 109.47121 * 325.00428 * 13 12 10 15 15 C 1.53006 * 109.46820 * 85.00425 * 13 12 10 16 16 C 1.50696 * 109.47150 * 205.00074 * 13 12 10 17 17 H 1.08001 * 120.00149 * 0.02562 * 16 13 12 18 18 C 1.37874 * 119.99981 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99917 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00045 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47189 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47307 * 120.00011 * 20 18 16 23 23 H 1.48507 * 109.46878 * 239.99925 * 20 18 16 24 24 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47247 * 299.99609 * 1 2 3 26 26 H 1.09003 * 109.47656 * 60.00097 * 1 2 3 27 27 H 0.96998 * 120.00283 * 180.02562 * 2 1 3 28 28 H 1.07994 * 119.97578 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.83258 * 180.02562 * 7 5 4 30 30 H 1.08000 * 120.02812 * 180.27242 * 8 7 5 31 31 H 0.97003 * 120.00424 * 0.27683 * 12 10 9 32 32 H 1.08995 * 109.47448 * 59.99518 * 15 13 12 33 33 H 1.08997 * 109.47117 * 180.02562 * 15 13 12 34 34 H 1.09006 * 109.46690 * 299.99650 * 15 13 12 35 35 H 0.97005 * 119.99991 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2027 0.0000 4 6 1.4734 2.4047 0.1179 5 6 2.1664 3.5993 0.1181 6 17 1.3024 5.0979 0.2652 7 6 3.5490 3.6089 0.0016 8 6 4.2458 2.4266 -0.1098 9 6 3.5581 1.2097 -0.1180 10 6 4.2978 -0.0588 -0.2438 11 8 3.7093 -1.1183 -0.1434 12 7 5.6254 -0.0446 -0.4755 13 6 6.3596 -1.3056 -0.6064 14 1 5.9290 -2.0482 0.0654 15 6 6.2615 -1.8054 -2.0492 16 6 7.8067 -1.0838 -0.2490 17 1 8.1455 -0.1018 0.0465 18 6 8.6980 -2.1344 -0.2994 19 7 8.2855 -3.3301 -0.6598 20 14 10.4917 -1.8597 0.1444 21 1 10.6980 -0.4359 0.5124 22 1 10.8556 -2.7263 1.2940 23 1 11.3474 -2.1982 -1.0212 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.3973 2.4051 0.2094 29 1 4.0819 4.5484 0.0032 30 1 5.3223 2.4396 -0.1959 31 1 6.0948 0.8005 -0.5556 32 1 6.6919 -1.0628 -2.7211 33 1 6.8073 -2.7438 -2.1466 34 1 5.2147 -1.9658 -2.3077 35 1 8.9126 -4.0694 -0.6948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570580247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -17.801944 kcal Electronic energy + Delta-G solvation = -19534.692270 eV Core-core repulsion = 16365.296085 eV Total energy + Delta-G solvation = -3169.396184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13604 -38.13486 -36.67251 -35.55957 -34.68851 -32.51091 -31.02232 -29.79458 -28.68304 -25.86507 -25.28869 -23.75492 -21.73356 -21.12267 -19.61080 -18.05359 -17.20859 -16.41458 -15.72110 -15.28492 -14.96186 -14.67733 -14.52420 -14.20279 -13.96383 -13.72082 -13.18006 -13.05129 -12.46002 -12.36350 -12.13096 -11.80070 -11.56498 -11.52082 -11.11939 -10.99476 -10.98862 -10.77627 -10.33519 -10.27223 -10.07991 -9.16569 -9.08083 -8.83274 -8.59647 -8.03615 -7.39073 -6.15907 -4.25263 0.90383 1.53953 2.02202 3.20411 3.22261 3.30133 3.32745 3.62038 4.02191 4.09883 4.35494 4.76318 5.09272 5.11816 5.16865 5.28876 5.33547 5.38533 5.55577 5.61217 5.67897 6.04639 6.21698 6.32640 6.61130 6.78499 6.91535 7.09999 7.30901 7.33104 7.51492 7.65425 7.86407 7.98448 8.12946 8.58220 8.73165 9.04099 9.42355 10.90118 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.004048 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.241615 B = 6915.110776 C = 7855.356290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.726 5.726 3 C 0.282 3.718 4 C -0.210 4.210 5 C 0.036 3.964 6 Cl -0.077 7.077 7 C -0.187 4.187 8 C -0.023 4.023 9 C -0.211 4.211 10 C 0.557 3.443 11 O -0.564 6.564 12 N -0.697 5.697 13 C 0.263 3.737 14 H 0.051 0.949 15 C -0.147 4.147 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.425 0.575 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.390 0.610 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 12.364 0.618 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.171 3.829 4 C -0.234 4.234 5 C 0.008 3.992 6 Cl -0.048 7.048 7 C -0.208 4.208 8 C -0.043 4.043 9 C -0.219 4.219 10 C 0.345 3.655 11 O -0.447 6.447 12 N -0.343 5.343 13 C 0.162 3.838 14 H 0.068 0.932 15 C -0.205 4.205 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.276 0.724 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.224 0.776 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.271 11.420 0.661 17.521 hybrid contribution 1.227 0.425 0.177 1.311 sum -12.044 11.845 0.838 16.913 Atomic orbital electron populations 1.21641 0.81015 1.02694 1.00855 1.45590 1.05917 1.07629 1.77353 1.17592 0.89625 0.86594 0.89134 1.20383 1.00192 0.89511 1.13275 1.20742 0.92268 0.86233 0.99926 1.98358 1.77238 1.33130 1.96097 1.20630 0.91686 0.98927 1.09547 1.21084 0.99817 0.90448 0.92926 1.19755 0.92256 0.94643 1.15257 1.17955 0.83012 0.87485 0.77042 1.90318 1.67363 1.32434 1.54548 1.46429 1.06816 1.11971 1.69128 1.18809 0.90403 0.80408 0.94211 0.93164 1.22080 0.97828 1.03006 0.97635 1.21243 0.92655 0.96227 1.47155 0.91956 1.24883 0.99165 0.94902 0.94710 1.69910 1.35077 1.00360 1.46707 0.86384 0.84175 0.78360 0.78134 1.19681 1.20859 1.20856 0.90572 0.92947 0.92930 0.72411 0.84829 0.84986 0.84592 0.77634 0.95391 0.89053 0.96639 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.97 59.85 0.60 1.45 16 2 N -0.73 -10.65 5.74 -65.21 -0.37 -11.02 16 3 C 0.28 4.27 6.65 -83.62 -0.56 3.71 16 4 C -0.21 -2.70 9.07 -39.39 -0.36 -3.05 16 5 C 0.04 0.44 6.32 -39.43 -0.25 0.19 16 6 Cl -0.08 -0.83 28.94 -51.86 -1.50 -2.33 16 7 C -0.19 -2.27 9.80 -39.59 -0.39 -2.66 16 8 C -0.02 -0.31 9.52 -39.21 -0.37 -0.69 16 9 C -0.21 -3.45 5.89 -104.80 -0.62 -4.06 16 10 C 0.56 11.16 7.71 -12.54 -0.10 11.06 16 11 O -0.56 -12.70 13.30 5.27 0.07 -12.63 16 12 N -0.70 -14.37 5.02 -56.02 -0.28 -14.65 16 13 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 16 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.51 11.32 55.43 0.63 -23.89 16 20 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.47 7.73 -51.93 -0.40 0.07 16 26 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.43 7.25 5.34 -40.95 -0.22 7.04 16 28 H 0.13 1.46 6.72 -52.49 -0.35 1.11 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.14 1.61 6.45 -52.49 -0.34 1.28 16 31 H 0.39 6.95 6.60 -40.82 -0.27 6.68 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -29.07 309.09 -8.03 -37.10 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.94 Total: 10.87 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.27 Total: -3.46 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.03 Total: -49.56 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.07 -8.03 -37.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570580247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.302 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds