Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47322 * 2 1 4 4 C 1.35930 * 119.71538 * 124.99465 * 3 2 1 5 5 C 1.41641 * 118.84882 * 180.02562 * 4 3 2 6 6 N 1.31554 * 120.86292 * 180.02562 * 5 4 3 7 7 N 1.38226 * 118.27599 * 0.02562 * 5 4 3 8 8 H 0.97003 * 120.36650 * 179.97438 * 7 5 4 9 9 C 1.36495 * 119.26785 * 0.02562 * 7 5 4 10 10 S 1.76202 * 119.43162 * 179.72084 * 9 7 5 11 11 C 1.81002 * 99.99876 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47250 * 179.97438 * 11 10 9 13 13 O 1.21293 * 119.99823 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99867 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99552 * 180.02562 * 14 12 11 16 16 H 1.07993 * 120.00421 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99608 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46863 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47244 * 119.99484 * 19 17 15 22 22 H 1.48495 * 109.47083 * 239.99984 * 19 17 15 23 23 N 1.31671 * 121.13130 * 359.97438 * 9 7 5 24 24 H 1.08995 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47439 * 300.00623 * 1 2 3 26 26 H 1.09003 * 109.46216 * 60.00331 * 1 2 3 27 27 H 1.08993 * 109.47439 * 239.99377 * 2 1 3 28 28 H 1.09008 * 109.46908 * 119.99593 * 2 1 3 29 29 H 1.08002 * 120.57341 * 0.04361 * 4 3 2 30 30 H 0.97000 * 120.00308 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.46934 * 300.00244 * 11 10 9 32 32 H 1.09000 * 109.47056 * 59.99646 * 11 10 9 33 33 H 0.96995 * 120.00489 * 0.02562 * 14 12 11 34 34 H 0.97006 * 119.99996 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8953 1.8303 0.9671 5 6 3.3554 3.1698 0.9499 6 7 4.1914 3.6080 1.8662 7 7 2.9033 4.0046 -0.0547 8 1 3.1985 4.9277 -0.0953 9 6 2.0358 3.5160 -0.9885 10 16 1.4509 4.5784 -2.2667 11 6 0.3804 3.4286 -3.1657 12 6 -0.2480 4.1387 -4.3370 13 8 0.0036 5.3070 -4.5439 14 7 -1.0887 3.4752 -5.1552 15 6 -1.6599 4.1211 -6.2211 16 1 -1.4366 5.1615 -6.4049 17 6 -2.5271 3.4371 -7.0643 18 7 -2.7993 2.1712 -6.8404 19 14 -3.3060 4.3173 -8.5163 20 1 -2.8410 5.7273 -8.5478 21 1 -2.9123 3.6374 -9.7765 22 1 -4.7843 4.2871 -8.3784 23 7 1.6248 2.2657 -0.9476 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.2246 1.1461 1.7351 30 1 4.4988 4.5277 1.8423 31 1 0.9722 2.5869 -3.5255 32 1 -0.4019 3.0644 -2.4998 33 1 -1.2896 2.5407 -4.9899 34 1 -3.4044 1.6936 -7.4293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573314771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = 11.827864 kcal Electronic energy + Delta-G solvation = -18905.531846 eV Core-core repulsion = 15771.756964 eV Total energy + Delta-G solvation = -3133.774882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85356 -38.32145 -36.16894 -34.27298 -34.16384 -31.83324 -31.51735 -29.94282 -29.12402 -25.21549 -24.72085 -24.20840 -21.45846 -19.83589 -18.83104 -18.30526 -18.12295 -17.28201 -16.09540 -15.64555 -15.34961 -14.66336 -14.61192 -14.50721 -14.30015 -14.02411 -13.60911 -13.13142 -12.66400 -12.46807 -12.30766 -11.68070 -11.67721 -11.57456 -11.26830 -11.18200 -10.63870 -10.48251 -10.45413 -10.35970 -10.18229 -9.73411 -9.71263 -8.76217 -8.39206 -8.16672 -7.50401 -6.58468 -4.00483 0.56583 0.95074 1.77945 2.04142 2.86892 3.05665 3.19326 3.26046 3.47745 3.62848 4.04161 4.14519 4.41560 4.70366 5.02016 5.06880 5.14469 5.23154 5.26540 5.52885 5.53766 5.69770 5.73663 5.84176 5.86709 6.00842 6.07907 6.21407 6.33361 6.82806 7.40248 7.68720 7.83652 8.13780 8.35582 8.97169 9.29650 9.77500 10.58230 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.003769 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.852105 B = 7426.484052 C = 8404.599838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.180 3.820 4 C -0.235 4.235 5 C 0.435 3.565 6 N -0.768 5.768 7 N -0.648 5.648 8 H 0.414 0.586 9 C 0.359 3.641 10 S 0.070 5.930 11 C -0.118 4.118 12 C 0.445 3.555 13 O -0.587 6.587 14 N -0.543 5.543 15 C -0.305 4.305 16 H 0.107 0.893 17 C 0.027 3.973 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.553 5.553 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.328 0.672 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -3.403 11.567 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.056 3.944 4 C -0.264 4.264 5 C 0.165 3.835 6 N -0.402 5.402 7 N -0.280 5.280 8 H 0.252 0.748 9 C -0.015 4.015 10 S 0.304 5.696 11 C -0.270 4.270 12 C 0.229 3.771 13 O -0.473 6.473 14 N -0.178 5.178 15 C -0.434 4.434 16 H 0.125 0.875 17 C -0.176 4.176 18 N -0.533 5.533 19 Si 0.759 3.241 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.206 1.206 23 N -0.282 5.282 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.166 0.834 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.157 -2.527 11.393 13.690 hybrid contribution -0.230 -0.092 -0.310 0.397 sum 6.927 -2.618 11.083 13.329 Atomic orbital electron populations 1.21661 0.93735 1.01908 1.02904 1.20505 0.97285 0.89816 1.03348 1.20812 0.89875 0.95541 0.88214 1.21098 1.06599 0.93637 1.05095 1.20363 0.89268 0.91037 0.82800 1.70720 1.21322 1.22244 1.25923 1.44713 1.42146 1.15392 1.25733 0.74762 1.26070 0.87811 0.94937 0.92652 1.86564 1.52346 1.10046 1.20636 1.23704 1.01923 1.01197 1.00192 1.18958 0.85173 0.87728 0.85269 1.90570 1.65584 1.16390 1.74777 1.41738 1.38589 1.13225 1.24208 1.19809 1.23115 0.97589 1.02935 0.87495 1.25333 0.97150 0.95689 0.99415 1.69617 1.35825 1.08744 1.39086 0.85753 0.78636 0.79587 0.80118 1.19048 1.20546 1.20553 1.68619 1.30927 1.00291 1.28337 0.92189 0.92952 0.91213 0.89575 0.90125 0.83378 0.85683 0.86689 0.86711 0.76969 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.77 37.16 0.36 -1.03 16 2 C -0.07 -0.68 6.33 -27.88 -0.18 -0.86 16 3 C 0.18 2.19 6.15 -82.77 -0.51 1.68 16 4 C -0.24 -2.91 9.66 -39.11 -0.38 -3.29 16 5 C 0.44 5.68 7.84 -155.52 -1.22 4.46 16 6 N -0.77 -10.31 14.11 31.36 0.44 -9.86 16 7 N -0.65 -7.60 5.47 -11.84 -0.06 -7.66 16 8 H 0.41 3.87 8.81 -40.82 -0.36 3.51 16 9 C 0.36 4.73 7.97 -88.05 -0.70 4.03 16 10 S 0.07 1.01 21.34 -107.50 -2.29 -1.28 16 11 C -0.12 -1.92 5.30 36.00 0.19 -1.73 16 12 C 0.44 9.72 7.80 -10.99 -0.09 9.63 16 13 O -0.59 -14.76 15.44 5.55 0.09 -14.67 16 14 N -0.54 -12.86 5.29 -10.96 -0.06 -12.91 16 15 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.89 -22.99 13.05 55.50 0.72 -22.27 16 19 Si 0.93 19.96 29.55 -169.99 -5.02 14.93 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 N -0.55 -7.46 8.63 -9.37 -0.08 -7.55 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.61 7.85 -51.92 -0.41 0.20 16 29 H 0.15 1.63 7.93 -52.49 -0.42 1.22 16 30 H 0.33 3.78 8.89 -40.82 -0.36 3.41 16 31 H 0.11 1.73 8.12 -51.91 -0.42 1.31 16 32 H 0.11 1.72 8.11 -51.92 -0.42 1.30 16 33 H 0.40 8.94 7.90 -40.82 -0.32 8.61 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -29.98 315.66 -8.17 -38.15 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -3.90 Total: 13.04 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.76 Total: 5.32 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.96 Total: -60.25 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.29 Total: -1.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.98 -8.17 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573314771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.981 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds