Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47383 * 2 1 4 4 C 1.36913 * 120.00021 * 273.82975 * 3 2 1 5 5 H 1.08003 * 119.99679 * 186.43225 * 4 3 2 6 6 C 1.39008 * 120.00487 * 6.43888 * 4 3 2 7 7 N 1.31391 * 119.99776 * 15.35025 * 6 4 3 8 8 Si 1.86794 * 120.00400 * 195.35540 * 6 4 3 9 9 H 1.48501 * 109.46962 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47295 * 119.99445 * 8 6 4 11 11 H 1.48494 * 109.47424 * 239.99698 * 8 6 4 12 12 C 1.34776 * 119.99851 * 93.82895 * 3 2 1 13 13 O 1.21643 * 120.00005 * 184.91747 * 12 3 2 14 14 C 1.47277 * 120.00246 * 4.92505 * 12 3 2 15 15 C 1.39821 * 120.20019 * 55.86120 * 14 12 3 16 16 C 1.37675 * 119.93324 * 179.97438 * 15 14 12 17 17 C 1.38771 * 120.34353 * 359.97438 * 16 15 14 18 18 Cl 1.73604 * 119.79864 * 179.97438 * 17 16 15 19 19 C 1.38120 * 120.40909 * 359.78561 * 17 16 15 20 20 C 1.38872 * 120.05503 * 0.47155 * 19 17 16 21 21 N 1.38884 * 120.17754 * 179.79004 * 20 19 17 22 22 C 1.46509 * 119.99382 * 354.76331 * 21 20 19 23 23 H 1.09005 * 109.46843 * 300.00112 * 1 2 3 24 24 H 1.09004 * 109.47440 * 59.99457 * 1 2 3 25 25 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47060 * 240.00390 * 2 1 3 27 27 H 1.09004 * 109.47440 * 120.00543 * 2 1 3 28 28 H 0.96998 * 120.00323 * 180.02562 * 7 6 4 29 29 H 1.08005 * 120.03535 * 0.02562 * 15 14 12 30 30 H 1.07998 * 119.82766 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.98080 * 180.23188 * 19 17 16 32 32 H 0.96995 * 120.00670 * 175.04512 * 21 20 19 33 33 H 1.09002 * 109.46973 * 179.97438 * 22 21 20 34 34 H 1.09001 * 109.47203 * 300.00126 * 22 21 20 35 35 H 1.09003 * 109.46641 * 60.00424 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1719 2.0530 -1.1831 5 1 2.6286 3.0316 -1.1929 6 6 1.7398 1.4756 -2.3715 7 7 0.9258 0.4446 -2.3430 8 14 2.3165 2.1654 -4.0088 9 1 3.2219 3.3178 -3.7691 10 1 3.0452 1.1122 -4.7606 11 1 1.1417 2.6141 -4.7984 12 6 2.3164 1.9905 1.1646 13 8 2.6360 3.1642 1.1726 14 6 2.2555 1.2353 2.4276 15 6 2.9964 0.0595 2.5804 16 6 2.9357 -0.6418 3.7636 17 6 2.1426 -0.1877 4.8078 18 17 2.0760 -1.0836 6.2934 19 6 1.4086 0.9747 4.6740 20 6 1.4532 1.6924 3.4860 21 7 0.7129 2.8592 3.3470 22 6 -0.2055 3.2749 4.4102 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.6246 0.0415 -3.1722 29 1 3.6164 -0.2979 1.7714 30 1 3.5091 -1.5496 3.8800 31 1 0.7965 1.3237 5.4924 32 1 0.8007 3.3968 2.5445 33 1 -0.6936 4.2068 4.1249 34 1 -0.9585 2.5017 4.5627 35 1 0.3529 3.4256 5.3342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573384084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = 6.531354 kcal Electronic energy + Delta-G solvation = -20385.179631 eV Core-core repulsion = 17216.838618 eV Total energy + Delta-G solvation = -3168.341013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77995 -37.81649 -36.43143 -35.30690 -34.87225 -31.90303 -30.37983 -29.51608 -29.38622 -25.89815 -25.05012 -23.05930 -21.96674 -21.29844 -19.49740 -17.35664 -16.84648 -16.52844 -15.85677 -15.08629 -14.53675 -14.33614 -14.05978 -13.84183 -13.79342 -13.38373 -13.03711 -12.79502 -12.74185 -12.03742 -11.95651 -11.59877 -11.50027 -11.24960 -11.15846 -11.05049 -10.75845 -10.62970 -10.36251 -10.17704 -10.02394 -9.66104 -8.92991 -8.57474 -8.30464 -7.78036 -7.12803 -6.32437 -3.87340 1.38869 1.84030 2.30841 3.08430 3.21003 3.27849 3.68260 3.80240 4.01750 4.17970 4.85650 5.02110 5.16658 5.26466 5.40124 5.54494 5.57559 5.70992 5.76030 5.89764 6.00058 6.27862 6.37309 6.53246 6.68152 6.72555 6.80540 6.90794 6.96274 7.31625 7.46010 7.57600 7.87215 7.99267 8.04574 8.46010 9.10031 9.36175 9.91523 10.56573 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.005178 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.801607 B = 5405.693109 C = 5862.727853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 N -0.425 5.425 4 C -0.296 4.296 5 H 0.106 0.894 6 C 0.024 3.976 7 N -0.866 5.866 8 Si 0.928 3.072 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.475 3.525 13 O -0.598 6.598 14 C -0.157 4.157 15 C -0.039 4.039 16 C -0.177 4.177 17 C 0.017 3.983 18 Cl -0.086 7.086 19 C -0.201 4.201 20 C 0.260 3.740 21 N -0.736 5.736 22 C 0.092 3.908 23 H 0.013 0.987 24 H 0.103 0.897 25 H 0.032 0.968 26 H 0.099 0.901 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.416 0.584 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -3.123 10.516 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.005 4.005 3 N -0.141 5.141 4 C -0.424 4.424 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.507 5.507 8 Si 0.755 3.245 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.264 3.736 13 O -0.485 6.485 14 C -0.165 4.165 15 C -0.059 4.059 16 C -0.198 4.198 17 C -0.011 4.011 18 Cl -0.058 7.058 19 C -0.225 4.225 20 C 0.152 3.848 21 N -0.365 5.365 22 C -0.053 4.053 23 H 0.032 0.968 24 H 0.121 0.879 25 H 0.051 0.949 26 H 0.117 0.883 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.599 -2.683 10.600 11.050 hybrid contribution 0.070 0.168 -0.901 0.920 sum -1.528 -2.515 9.698 10.135 Atomic orbital electron populations 1.22258 0.96424 0.99622 1.01827 1.21704 0.95120 0.83071 1.00640 1.43842 1.53588 1.11955 1.04729 1.19893 1.36570 1.03400 0.82499 0.87615 1.25321 0.95667 0.96932 0.99886 1.70195 1.29661 1.23404 1.27408 0.85818 0.78684 0.78925 0.81063 1.19250 1.20567 1.20793 1.17575 0.86304 0.86886 0.82793 1.90610 1.55276 1.16181 1.86480 1.19789 1.02872 0.98218 0.95666 1.20980 0.96372 0.92219 0.96330 1.20590 1.03582 1.02599 0.93030 1.20565 0.99526 0.93632 0.87367 1.98332 1.97678 1.75030 1.34732 1.20245 1.07059 0.97417 0.97735 1.17456 0.89444 0.86341 0.91576 1.44482 1.44747 1.24346 1.22918 1.21555 0.92705 0.99984 0.91086 0.96821 0.87898 0.94859 0.88273 0.93974 0.92301 0.84923 0.85461 0.85294 0.74611 0.90850 0.93029 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.53 37.15 0.35 -2.78 16 2 C 0.12 2.63 5.22 -4.05 -0.02 2.61 16 3 N -0.43 -10.58 2.62 -116.08 -0.30 -10.88 16 4 C -0.30 -7.88 9.49 -15.00 -0.14 -8.02 16 5 H 0.11 2.98 7.24 -52.48 -0.38 2.60 16 6 C 0.02 0.60 5.18 -17.45 -0.09 0.51 16 7 N -0.87 -21.26 7.41 55.50 0.41 -20.85 16 8 Si 0.93 19.83 29.58 -169.99 -5.03 14.81 16 9 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.48 11.53 6.38 -12.59 -0.08 11.45 16 13 O -0.60 -16.21 15.51 5.24 0.08 -16.13 16 14 C -0.16 -3.20 4.91 -104.80 -0.51 -3.71 16 15 C -0.04 -0.69 7.49 -39.20 -0.29 -0.99 16 16 C -0.18 -2.72 9.80 -39.59 -0.39 -3.11 16 17 C 0.02 0.25 6.32 -39.43 -0.25 0.00 16 18 Cl -0.09 -1.12 28.94 -51.86 -1.50 -2.62 16 19 C -0.20 -3.16 9.07 -39.39 -0.36 -3.51 16 20 C 0.26 4.74 6.65 -83.60 -0.56 4.19 16 21 N -0.74 -12.60 5.77 -65.19 -0.38 -12.98 16 22 C 0.09 1.12 9.96 59.85 0.60 1.72 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.10 2.51 5.74 -51.93 -0.30 2.22 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 2.36 6.09 -51.93 -0.32 2.04 16 27 H 0.04 0.85 4.45 -51.93 -0.23 0.62 16 28 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 29 H 0.13 2.25 7.58 -52.48 -0.40 1.85 16 30 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 1.75 6.72 -52.49 -0.35 1.40 16 32 H 0.42 8.07 6.88 -40.82 -0.28 7.79 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.05 0.56 7.74 -51.93 -0.40 0.16 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -28.10 302.51 -7.81 -35.90 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.91 Total: 9.83 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.74 Total: -1.64 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.27 Total: -44.71 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.08 Total: -16.13 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.10 -7.81 -35.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573384084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.434 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds