Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39770 * 119.99964 * 2 1 4 4 C 1.39050 * 119.98475 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.24005 * 179.97438 * 4 3 2 6 6 C 1.38176 * 120.21744 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 120.01570 * 179.97438 * 6 5 4 8 8 C 1.39687 * 119.96598 * 0.02562 * 6 5 4 9 9 C 1.47791 * 120.12272 * 180.02562 * 8 6 5 10 10 O 1.21567 * 119.99546 * 311.49778 * 9 8 6 11 11 N 1.34769 * 120.00224 * 131.77211 * 9 8 6 12 12 C 1.46499 * 120.00069 * 4.46367 * 11 9 8 13 13 C 1.46500 * 119.99974 * 184.45841 * 11 9 8 14 14 C 1.50700 * 109.47339 * 90.00152 * 13 11 9 15 15 H 1.07995 * 119.99643 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00109 * 180.02562 * 14 13 11 17 17 N 1.31507 * 120.00295 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46906 * 59.99829 * 18 16 14 20 20 H 1.48499 * 109.47046 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47144 * 300.00016 * 18 16 14 22 22 C 1.38582 * 119.98719 * 180.27848 * 3 2 1 23 23 H 1.09001 * 109.46768 * 299.99142 * 1 2 3 24 24 H 1.08993 * 109.47244 * 59.99536 * 1 2 3 25 25 H 1.09001 * 109.46725 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99807 * 180.02562 * 2 1 3 27 27 H 1.07997 * 119.88007 * 359.97155 * 4 3 2 28 28 H 1.07998 * 119.88896 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47520 * 84.81071 * 12 11 9 30 30 H 1.09007 * 109.46611 * 204.81151 * 12 11 9 31 31 H 1.08998 * 109.46939 * 324.80309 * 12 11 9 32 32 H 1.09000 * 109.47450 * 210.00296 * 13 11 9 33 33 H 1.09004 * 109.47036 * 330.00228 * 13 11 9 34 34 H 0.97004 * 120.00445 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.10232 * 0.03064 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1639 1.2105 0.0000 4 6 1.4683 2.4145 0.0005 5 6 2.1538 3.6140 0.0011 6 6 3.5355 3.6254 0.0016 7 17 4.3915 5.1357 0.0016 8 6 4.2432 2.4211 0.0011 9 6 5.7211 2.4293 0.0022 10 8 6.3256 3.1309 -0.7852 11 7 6.3986 1.6547 0.8725 12 6 5.6739 0.7324 1.7501 13 6 7.8598 1.7350 0.9408 14 6 8.2588 2.7808 1.9499 15 1 7.4999 3.3302 2.4869 16 6 9.5928 3.0360 2.1874 17 7 10.5169 2.3666 1.5338 18 14 10.0873 4.3318 3.4388 19 1 9.5496 3.9623 4.7727 20 1 11.5685 4.4141 3.5070 21 1 9.5370 5.6494 3.0309 22 6 3.5497 1.2102 -0.0058 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9501 -0.8401 -0.0004 27 1 0.3884 2.4119 0.0005 28 1 1.6078 4.5458 0.0011 29 1 5.4872 -0.2019 1.2207 30 1 6.2711 0.5327 2.6399 31 1 4.7243 1.1801 2.0430 32 1 8.2633 0.7680 1.2408 33 1 8.2549 2.0056 -0.0385 34 1 11.4554 2.5464 1.7007 35 1 4.0912 0.2757 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591815192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -3.849909 kcal Electronic energy + Delta-G solvation = -19744.772292 eV Core-core repulsion = 16575.981113 eV Total energy + Delta-G solvation = -3168.791179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99331 -38.28838 -36.32823 -35.06196 -34.77111 -32.65133 -31.20231 -29.65432 -27.71256 -26.10161 -25.81731 -23.72206 -22.68325 -21.49139 -18.98673 -17.30923 -16.74271 -16.47072 -16.29914 -15.41534 -15.26177 -14.62604 -14.45249 -14.27301 -13.97859 -13.66484 -13.02300 -12.92796 -12.50168 -12.33045 -12.11754 -11.97243 -11.85467 -11.49249 -11.30304 -11.14704 -10.86690 -10.53257 -10.46472 -10.11132 -9.79290 -9.61230 -9.05265 -8.80958 -8.38700 -7.61802 -7.46829 -6.00011 -4.04409 1.10056 1.38714 2.57027 3.20720 3.35560 3.37120 3.39921 3.44887 3.76153 4.09425 4.48791 4.73658 4.85125 4.86674 5.16054 5.19443 5.31461 5.34755 5.39184 5.45302 5.72874 5.81045 5.92184 5.96997 6.11667 6.24856 6.32212 6.50299 7.07828 7.09824 7.45674 7.47776 7.56932 7.96637 8.27390 8.40684 8.92919 9.09495 9.60459 11.08083 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.005019 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.018964 B = 5577.406844 C = 6295.978358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.753 5.753 3 C 0.208 3.792 4 C -0.176 4.176 5 C -0.071 4.071 6 C -0.051 4.051 7 Cl -0.052 7.052 8 C -0.057 4.057 9 C 0.545 3.455 10 O -0.517 6.517 11 N -0.593 5.593 12 C 0.083 3.917 13 C 0.246 3.754 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.157 4.157 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.402 0.598 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.379 -5.374 -1.377 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.383 5.383 3 C 0.105 3.895 4 C -0.199 4.199 5 C -0.090 4.090 6 C -0.080 4.080 7 Cl -0.023 7.023 8 C -0.061 4.061 9 C 0.331 3.669 10 O -0.394 6.394 11 N -0.325 5.325 12 C -0.061 4.061 13 C 0.127 3.873 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.180 4.180 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.236 0.764 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.949 -4.874 -1.804 21.584 hybrid contribution 0.492 0.422 0.810 1.038 sum -20.457 -4.451 -0.994 20.959 Atomic orbital electron populations 1.21522 0.80189 1.02331 1.01064 1.44408 1.05613 1.05166 1.83160 1.17693 0.90716 0.86541 0.94546 1.20602 0.99633 0.90407 1.09232 1.20715 0.91496 0.98447 0.98346 1.20677 0.92008 0.87271 1.08086 1.98396 1.77294 1.29810 1.96831 1.19888 0.94913 0.91989 0.99351 1.18006 0.85644 0.81073 0.82209 1.90791 1.69044 1.40551 1.38967 1.48059 1.09842 1.38528 1.36086 1.21781 0.97157 0.92276 0.94922 1.19334 0.71973 0.97244 0.98766 1.21403 0.91932 1.20791 1.22312 0.92410 1.24911 0.96314 0.96332 0.96415 1.69919 1.00596 1.41288 1.41660 0.86578 0.77224 0.82275 0.81494 1.20241 1.21190 1.20122 1.20782 0.91881 0.97654 1.07729 0.92944 0.93011 0.90902 0.76387 0.85330 0.84797 0.93902 0.90665 0.92240 0.94857 0.93566 0.92693 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 9.94 59.85 0.59 1.13 16 2 N -0.75 -6.20 5.89 -65.42 -0.39 -6.58 16 3 C 0.21 2.37 6.65 -83.81 -0.56 1.82 16 4 C -0.18 -1.94 9.31 -39.31 -0.37 -2.31 16 5 C -0.07 -0.91 9.81 -39.63 -0.39 -1.30 16 6 C -0.05 -0.85 6.34 -39.06 -0.25 -1.10 16 7 Cl -0.05 -0.98 27.13 -51.86 -1.41 -2.38 16 8 C -0.06 -1.01 4.91 -104.96 -0.52 -1.52 16 9 C 0.55 12.21 6.76 -12.36 -0.08 12.12 16 10 O -0.52 -13.66 15.36 5.31 0.08 -13.58 16 11 N -0.59 -13.13 2.86 -184.10 -0.53 -13.66 16 12 C 0.08 1.38 9.05 59.85 0.54 1.92 16 13 C 0.25 6.56 5.17 -5.19 -0.03 6.53 16 14 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 18 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.16 -2.18 7.62 -38.97 -0.30 -2.48 16 23 H 0.05 0.29 7.94 -51.93 -0.41 -0.12 16 24 H 0.05 0.29 7.94 -51.93 -0.41 -0.12 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.40 2.72 8.84 -40.82 -0.36 2.36 16 27 H 0.13 1.07 6.71 -52.49 -0.35 0.71 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.04 0.58 7.04 -51.93 -0.37 0.22 16 30 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.06 0.90 6.27 -51.93 -0.33 0.57 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.14 1.69 6.25 -52.49 -0.33 1.37 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -34.47 312.56 -7.74 -42.21 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.17 Total: -2.80 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.77 Total: 0.99 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.17 Total: -46.45 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.41 Total: -2.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.47 -7.74 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591815192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.365 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds