Wall clock time and date at job start Tue Mar 31 2020 06:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39770 * 119.99964 * 2 1 4 4 C 1.39050 * 119.98475 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.24005 * 179.97438 * 4 3 2 6 6 C 1.38176 * 120.21744 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 120.01570 * 179.97438 * 6 5 4 8 8 C 1.39687 * 119.96598 * 0.02562 * 6 5 4 9 9 C 1.47791 * 120.12272 * 180.02562 * 8 6 5 10 10 O 1.21567 * 119.99546 * 311.49778 * 9 8 6 11 11 N 1.34769 * 120.00224 * 131.77211 * 9 8 6 12 12 C 1.46499 * 120.00069 * 4.46367 * 11 9 8 13 13 C 1.46500 * 119.99974 * 184.45841 * 11 9 8 14 14 C 1.50700 * 109.47339 * 90.00152 * 13 11 9 15 15 H 1.07995 * 119.99643 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00109 * 180.02562 * 14 13 11 17 17 N 1.31507 * 120.00295 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46906 * 59.99829 * 18 16 14 20 20 H 1.48499 * 109.47046 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47144 * 300.00016 * 18 16 14 22 22 C 1.38582 * 119.98719 * 180.27848 * 3 2 1 23 23 H 1.09001 * 109.46768 * 299.99142 * 1 2 3 24 24 H 1.08993 * 109.47244 * 59.99536 * 1 2 3 25 25 H 1.09001 * 109.46725 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99807 * 180.02562 * 2 1 3 27 27 H 1.07997 * 119.88007 * 359.97155 * 4 3 2 28 28 H 1.07998 * 119.88896 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47520 * 84.81071 * 12 11 9 30 30 H 1.09007 * 109.46611 * 204.81151 * 12 11 9 31 31 H 1.08998 * 109.46939 * 324.80309 * 12 11 9 32 32 H 1.09000 * 109.47450 * 210.00296 * 13 11 9 33 33 H 1.09004 * 109.47036 * 330.00228 * 13 11 9 34 34 H 0.97004 * 120.00445 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.10232 * 0.03064 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1639 1.2105 0.0000 4 6 1.4683 2.4145 0.0005 5 6 2.1538 3.6140 0.0011 6 6 3.5355 3.6254 0.0016 7 17 4.3915 5.1357 0.0016 8 6 4.2432 2.4211 0.0011 9 6 5.7211 2.4293 0.0022 10 8 6.3256 3.1309 -0.7852 11 7 6.3986 1.6547 0.8725 12 6 5.6739 0.7324 1.7501 13 6 7.8598 1.7350 0.9408 14 6 8.2588 2.7808 1.9499 15 1 7.4999 3.3302 2.4869 16 6 9.5928 3.0360 2.1874 17 7 10.5169 2.3666 1.5338 18 14 10.0873 4.3318 3.4388 19 1 9.5496 3.9623 4.7727 20 1 11.5685 4.4141 3.5070 21 1 9.5370 5.6494 3.0309 22 6 3.5497 1.2102 -0.0058 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9501 -0.8401 -0.0004 27 1 0.3884 2.4119 0.0005 28 1 1.6078 4.5458 0.0011 29 1 5.4872 -0.2019 1.2207 30 1 6.2711 0.5327 2.6399 31 1 4.7243 1.1801 2.0430 32 1 8.2633 0.7680 1.2408 33 1 8.2549 2.0056 -0.0385 34 1 11.4554 2.5464 1.7007 35 1 4.0912 0.2757 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591815192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:17 Heat of formation + Delta-G solvation = -27.727812 kcal Electronic energy + Delta-G solvation = -19745.807715 eV Core-core repulsion = 16575.981113 eV Total energy + Delta-G solvation = -3169.826602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29808 -39.67234 -37.53718 -36.59761 -36.02064 -34.75177 -32.44783 -30.58749 -29.62831 -27.49966 -26.74445 -25.44196 -23.92257 -22.79016 -20.39719 -18.71080 -18.45847 -17.90925 -17.46854 -17.04230 -16.60978 -16.16904 -15.88040 -15.14705 -15.07629 -14.87733 -14.49415 -14.25011 -13.95864 -13.76408 -13.49270 -13.16616 -13.15076 -12.98224 -12.84540 -12.59489 -12.48766 -12.34684 -12.18910 -11.81638 -11.72703 -10.77849 -10.69155 -10.64287 -10.00166 -9.44823 -8.34945 -8.22505 -6.36901 -0.03411 0.35337 1.34928 1.35361 1.40012 1.47042 1.82544 2.26684 2.41222 2.56134 2.76765 3.06962 3.56528 3.81934 4.15942 4.30015 4.35603 4.39308 4.54368 4.62421 4.78781 4.80896 4.91074 4.94267 4.99681 5.06406 5.16108 5.21750 5.30015 5.54664 5.55275 5.82307 6.05754 6.31196 6.65911 6.72741 6.81031 7.25454 7.41226 8.84467 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.005019 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.018964 B = 5577.406844 C = 6295.978358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.742 5.742 3 C 0.221 3.779 4 C -0.162 4.162 5 C -0.061 4.061 6 C -0.079 4.079 7 Cl -0.087 7.087 8 C -0.081 4.081 9 C 0.539 3.461 10 O -0.575 6.575 11 N -0.601 5.601 12 C 0.081 3.919 13 C 0.261 3.739 14 C -0.543 4.543 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.963 3.037 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.281 1.281 22 C -0.159 4.159 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.411 0.589 27 H 0.167 0.833 28 H 0.158 0.842 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.001 0.999 34 H 0.268 0.732 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.780 -6.576 -0.174 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.116 3.884 4 C -0.185 4.185 5 C -0.081 4.081 6 C -0.109 4.109 7 Cl -0.058 7.058 8 C -0.085 4.085 9 C 0.327 3.673 10 O -0.455 6.455 11 N -0.331 5.331 12 C -0.061 4.061 13 C 0.140 3.860 14 C -0.581 4.581 15 H 0.068 0.932 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.788 3.212 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.206 1.206 22 C -0.182 4.182 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.246 0.754 27 H 0.184 0.816 28 H 0.176 0.824 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.412 -6.152 -0.574 25.182 hybrid contribution 1.371 0.637 0.389 1.561 sum -23.041 -5.515 -0.185 23.693 Atomic orbital electron populations 1.21797 0.78098 1.04290 1.01709 1.44604 1.06928 1.04348 1.81234 1.17738 0.89871 0.88122 0.92707 1.21006 1.01349 0.89262 1.06837 1.20981 0.89707 1.00443 0.96922 1.20898 0.93337 0.85546 1.11101 1.98374 1.78377 1.31912 1.97163 1.19523 0.91700 0.94104 1.03223 1.18780 0.87850 0.79673 0.80949 1.90737 1.70853 1.42740 1.41142 1.48057 1.08334 1.39679 1.37070 1.22040 0.97123 0.92699 0.94275 1.18809 0.75171 0.96326 0.95726 1.21632 0.92244 1.21447 1.22805 0.93229 1.25797 0.96218 0.98394 0.98368 1.70031 1.01017 1.42645 1.42925 0.85534 0.77347 0.78866 0.79495 1.18357 1.19995 1.20631 1.20790 0.93112 0.96440 1.07843 0.92113 0.92347 0.88568 0.75398 0.81569 0.82436 0.90365 0.91153 0.90303 0.95248 0.98121 0.92328 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 9.94 127.77 1.27 1.77 16 2 N -0.74 -8.68 5.89 -360.88 -2.13 -10.81 16 3 C 0.22 4.20 6.65 38.15 0.25 4.45 16 4 C -0.16 -2.87 9.31 22.45 0.21 -2.66 16 5 C -0.06 -1.42 9.81 22.24 0.22 -1.20 16 6 C -0.08 -2.64 6.34 22.61 0.14 -2.50 16 7 Cl -0.09 -3.38 27.13 -2.72 -0.07 -3.45 16 8 C -0.08 -2.87 4.91 -20.08 -0.10 -2.97 16 9 C 0.54 25.18 6.76 86.77 0.59 25.77 16 10 O -0.57 -32.42 15.36 -3.93 -0.06 -32.48 16 11 N -0.60 -27.47 2.86 -854.63 -2.44 -29.91 16 12 C 0.08 2.62 9.05 127.77 1.16 3.78 16 13 C 0.26 14.66 5.17 85.63 0.44 15.10 16 14 C -0.54 -32.55 9.39 25.60 0.24 -32.31 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.68 5.46 84.66 0.46 1.14 16 17 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 18 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 22 C -0.16 -4.06 7.62 22.67 0.17 -3.89 16 23 H 0.06 0.32 7.94 -2.39 -0.02 0.30 16 24 H 0.06 0.33 7.94 -2.39 -0.02 0.31 16 25 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.41 3.70 8.84 -92.71 -0.82 2.88 16 27 H 0.17 1.74 6.71 -2.91 -0.02 1.72 16 28 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.08 1.98 7.04 -2.39 -0.02 1.96 16 30 H 0.07 2.34 8.03 -2.38 -0.02 2.32 16 31 H 0.08 2.26 6.27 -2.39 -0.01 2.25 16 32 H 0.03 1.64 8.07 -2.39 -0.02 1.63 16 33 H 0.00 0.04 7.36 -2.38 -0.02 0.02 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.15 3.30 6.25 -2.91 -0.02 3.28 16 Total: -1.00 -80.21 312.56 2.97 -77.25 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 0.30 Total: 1.47 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.06 Total: 6.48 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.28 Total: -97.68 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.06 Total: -32.48 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.07 Total: -3.45 kcal Total: -80.21 2.97 -77.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591815192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.517 kcal (2) G-P(sol) polarization free energy of solvation -80.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds