Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32018 * 119.59046 * 2 1 4 4 C 1.31963 * 121.91814 * 180.02562 * 3 2 1 5 5 C 1.37947 * 120.86152 * 0.02562 * 4 3 2 6 6 C 1.39402 * 119.08206 * 0.02562 * 5 4 3 7 7 N 1.39243 * 120.86993 * 180.02562 * 6 5 4 8 8 C 1.48558 * 110.99751 * 60.12622 * 7 6 5 9 9 C 1.54376 * 104.59478 * 200.96260 * 8 7 6 10 10 C 1.54260 * 105.06329 * 23.85312 * 9 8 7 11 11 O 1.42893 * 110.32461 * 241.00784 * 10 9 8 12 12 C 1.50701 * 110.32277 * 118.89437 * 10 9 8 13 13 H 1.08002 * 119.99761 * 241.45190 * 12 10 9 14 14 C 1.37871 * 119.99694 * 61.73753 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.48559 * 110.99994 * 304.70957 * 7 6 5 21 21 C 1.37969 * 119.58249 * 180.30544 * 2 1 3 22 22 Cl 1.73592 * 120.48123 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47130 * 89.99778 * 1 2 3 24 24 H 1.09000 * 109.47128 * 209.99864 * 1 2 3 25 25 H 1.09000 * 109.47175 * 329.99432 * 1 2 3 26 26 H 1.07996 * 119.56725 * 179.97438 * 4 3 2 27 27 H 1.07997 * 120.45652 * 179.97438 * 5 4 3 28 28 H 1.09004 * 110.41186 * 82.18315 * 8 7 6 29 29 H 1.08999 * 110.51528 * 319.79130 * 8 7 6 30 30 H 1.09008 * 110.32622 * 264.95715 * 9 8 7 31 31 H 1.09001 * 110.32773 * 142.75227 * 9 8 7 32 32 H 0.96711 * 113.99913 * 297.16369 * 11 10 9 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 34 34 H 1.09006 * 110.41344 * 40.26012 * 20 7 6 35 35 H 1.08994 * 110.41171 * 277.82107 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1480 0.0000 4 6 3.4774 1.2016 -0.0005 5 6 4.2326 0.0472 -0.0016 6 6 3.5839 -1.1868 -0.0027 7 7 4.3094 -2.3753 -0.0033 8 6 5.1760 -2.4705 1.1996 9 6 6.2648 -3.4949 0.8145 10 6 6.3210 -3.4600 -0.7267 11 8 5.9956 -4.7433 -1.2644 12 6 7.6888 -3.0303 -1.1909 13 1 7.8025 -2.1281 -1.7736 14 6 8.7942 -3.7921 -0.8768 15 7 8.6557 -4.8908 -0.1673 16 14 10.4887 -3.2637 -1.4590 17 1 11.1119 -2.3856 -0.4363 18 1 11.3382 -4.4642 -1.6645 19 1 10.3631 -2.5210 -2.7388 20 6 5.2613 -2.4174 -1.1431 21 6 2.1881 -1.1998 -0.0064 22 17 1.3218 -2.7041 -0.0151 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 3.9717 2.1618 -0.0009 27 1 5.3113 0.0986 -0.0024 28 1 4.6021 -2.8289 2.0542 29 1 5.6262 -1.5035 1.4237 30 1 5.9874 -4.4906 1.1608 31 1 7.2266 -3.2014 1.2352 32 1 6.6155 -5.4426 -1.0158 33 1 9.4333 -5.4269 0.0533 34 1 5.7247 -1.4414 -1.2877 35 1 4.7516 -2.7357 -2.0524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -13.230853 kcal Electronic energy + Delta-G solvation = -20227.680902 eV Core-core repulsion = 17058.482935 eV Total energy + Delta-G solvation = -3169.197967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56913 -38.37758 -36.33124 -35.24489 -32.60700 -32.18954 -31.65572 -28.51490 -28.11108 -27.65850 -24.81797 -23.06225 -22.31568 -20.20389 -19.52232 -17.40317 -17.01877 -16.51933 -15.83927 -15.06680 -14.88329 -14.73088 -14.08883 -13.82745 -13.63097 -13.20208 -12.59839 -12.51791 -12.45359 -12.30724 -11.89600 -11.74445 -11.65008 -11.38726 -11.14568 -10.73530 -10.71853 -10.64123 -10.49162 -10.04314 -9.55743 -9.36904 -9.06679 -8.70969 -8.66989 -8.28649 -8.09858 -6.28472 -4.38328 1.00065 1.13343 2.32084 3.16586 3.25069 3.28181 3.63957 4.06730 4.24561 4.27843 4.85119 4.97065 4.99355 5.11021 5.40418 5.46104 5.52174 5.56830 5.73450 5.76908 5.85195 5.97155 6.01722 6.12522 6.27905 6.43486 6.54453 6.75343 6.90389 7.12717 7.34799 7.44787 7.59502 7.71906 7.88525 8.08510 8.64544 9.31269 9.49274 10.78026 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.005026 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.695190 B = 5569.387122 C = 6175.371042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.137 3.863 3 N -0.484 5.484 4 C 0.111 3.889 5 C -0.203 4.203 6 C 0.155 3.845 7 N -0.477 5.477 8 C 0.039 3.961 9 C -0.119 4.119 10 C 0.257 3.743 11 O -0.584 6.584 12 C -0.541 4.541 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.056 3.944 21 C -0.074 4.074 22 Cl -0.039 7.039 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.381 0.619 33 H 0.268 0.732 34 H 0.054 0.946 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 7.901 2.536 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.001 4.001 3 N -0.194 5.194 4 C -0.046 4.046 5 C -0.225 4.225 6 C 0.051 3.949 7 N -0.198 5.198 8 C -0.087 4.087 9 C -0.158 4.158 10 C 0.216 3.784 11 O -0.393 6.393 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.069 4.069 21 C -0.104 4.104 22 Cl -0.011 7.011 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.177 0.823 27 H 0.162 0.838 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.873 8.262 2.333 14.652 hybrid contribution 2.621 -0.277 0.039 2.636 sum -9.253 7.985 2.372 12.450 Atomic orbital electron populations 1.20766 0.88212 1.03818 1.03485 1.21107 0.97338 0.86470 0.95225 1.67661 1.10173 1.27488 1.14094 1.22632 0.89101 0.98414 0.94429 1.22828 1.02657 0.93148 1.03840 1.19431 0.92025 0.90832 0.92628 1.63120 1.24047 1.27593 1.05089 1.23294 0.94112 0.99639 0.91612 1.22889 0.96045 0.96933 0.99887 1.19168 0.90000 0.81226 0.87989 1.86144 1.55893 1.20091 1.77150 1.21670 0.91422 1.09803 1.35023 0.92135 1.24987 0.99463 0.94664 0.93977 1.69695 1.31093 1.14589 1.37787 0.86478 0.83343 0.78252 0.79261 1.20527 1.20966 1.19760 1.23276 0.92073 0.99088 0.92460 1.21874 0.91915 0.88751 1.07903 1.98353 1.75167 1.30974 1.96557 0.90052 0.90185 0.90230 0.82312 0.83768 0.91231 0.94014 0.92239 0.90575 0.76922 0.92178 0.92817 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.77 36.01 0.35 -0.78 16 2 C 0.14 1.94 6.78 -82.61 -0.56 1.38 16 3 N -0.48 -6.94 10.27 -9.54 -0.10 -7.04 16 4 C 0.11 1.48 11.17 -17.60 -0.20 1.28 16 5 C -0.20 -3.03 8.15 -39.25 -0.32 -3.35 16 6 C 0.15 2.64 4.91 -83.56 -0.41 2.23 16 7 N -0.48 -9.19 4.89 -166.48 -0.81 -10.01 16 8 C 0.04 0.74 6.36 -2.19 -0.01 0.73 16 9 C -0.12 -2.65 5.56 -25.35 -0.14 -2.79 16 10 C 0.26 6.17 1.06 -90.39 -0.10 6.08 16 11 O -0.58 -15.15 12.95 -35.23 -0.46 -15.61 16 12 C -0.54 -13.90 8.07 -34.44 -0.28 -14.17 16 13 H 0.06 1.54 7.58 -52.49 -0.40 1.15 16 14 C 0.07 1.83 5.02 -17.82 -0.09 1.74 16 15 N -0.89 -23.08 10.80 55.43 0.60 -22.48 16 16 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.06 1.20 5.63 -2.18 -0.01 1.18 16 21 C -0.07 -1.18 6.35 -39.18 -0.25 -1.42 16 22 Cl -0.04 -0.60 26.88 -51.86 -1.39 -2.00 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.80 6.90 -51.93 -0.36 0.44 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.14 2.08 6.88 -52.49 -0.36 1.72 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.74 6.86 -51.93 -0.36 0.38 16 30 H 0.06 1.38 7.98 -51.92 -0.41 0.96 16 31 H 0.08 1.80 7.25 -51.93 -0.38 1.43 16 32 H 0.38 9.95 7.28 45.56 0.33 10.28 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.05 1.09 6.10 -51.93 -0.32 0.77 16 35 H 0.08 1.71 8.08 -51.93 -0.42 1.29 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -27.27 301.20 -8.15 -35.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.50 Total: 10.09 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.01 Total: -7.89 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.31 Total: -39.52 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.46 Total: -15.61 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.39 Total: -2.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.27 -8.15 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.198 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds