Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32021 * 119.58141 * 2 1 4 4 C 1.31970 * 121.90879 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.86463 * 359.71505 * 4 3 2 6 6 C 1.39399 * 119.07826 * 0.58044 * 5 4 3 7 7 N 1.39246 * 120.86938 * 179.70621 * 6 5 4 8 8 C 1.48720 * 111.01522 * 304.21515 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96227 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42893 * 110.32804 * 118.84639 * 10 9 8 12 12 C 1.50701 * 110.32069 * 240.94890 * 10 9 8 13 13 H 1.08001 * 120.00030 * 118.54578 * 12 10 9 14 14 C 1.37881 * 120.00352 * 298.54543 * 12 10 9 15 15 N 1.31511 * 119.99467 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00369 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46989 * 90.00064 * 16 14 12 18 18 H 1.48497 * 109.47250 * 209.99973 * 16 14 12 19 19 H 1.48501 * 109.47363 * 330.00536 * 16 14 12 20 20 C 1.48567 * 110.99803 * 59.72361 * 7 6 5 21 21 C 1.37957 * 119.58501 * 180.02562 * 2 1 3 22 22 Cl 1.73599 * 120.47859 * 359.97438 * 21 2 1 23 23 H 1.08994 * 109.47443 * 269.97782 * 1 2 3 24 24 H 1.09004 * 109.46929 * 29.97839 * 1 2 3 25 25 H 1.09005 * 109.46797 * 149.97624 * 1 2 3 26 26 H 1.07999 * 119.56429 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.45930 * 180.29151 * 5 4 3 28 28 H 1.09004 * 110.38960 * 40.24195 * 8 7 6 29 29 H 1.08996 * 110.50963 * 277.74637 * 8 7 6 30 30 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 31 31 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 32 32 H 0.96693 * 114.00324 * 61.44649 * 11 10 9 33 33 H 0.96999 * 119.99733 * 179.97438 * 15 14 12 34 34 H 1.08999 * 110.41133 * 82.17875 * 20 7 6 35 35 H 1.09001 * 110.41003 * 319.74270 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1481 0.0000 4 6 3.4774 1.2017 -0.0005 5 6 4.2326 0.0473 0.0048 6 6 3.5840 -1.1866 -0.0015 7 7 4.3095 -2.3751 -0.0026 8 6 5.2580 -2.4199 -1.1472 9 6 6.3192 -3.4606 -0.7299 10 6 6.2671 -3.4938 0.8114 11 8 5.9046 -4.7984 1.2679 12 6 7.5990 -3.0896 1.3890 13 1 7.6719 -2.2143 2.0174 14 6 8.7248 -3.8371 1.1151 15 7 8.6361 -4.9027 0.3494 16 14 10.3759 -3.3357 1.8303 17 1 10.5640 -3.9922 3.1491 18 1 11.4624 -3.7553 0.9091 19 1 10.4139 -1.8611 2.0016 20 6 5.1793 -2.4689 1.1982 21 6 2.1881 -1.1997 -0.0005 22 17 1.3218 -2.7041 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 3.9717 2.1620 -0.0001 27 1 5.3113 0.0988 0.0091 28 1 5.7205 -1.4440 -1.2956 29 1 4.7467 -2.7412 -2.0545 30 1 7.3076 -3.1503 -1.0687 31 1 6.0700 -4.4400 -1.1383 32 1 6.5295 -5.4915 1.0146 33 1 9.4281 -5.4284 0.1564 34 1 4.6076 -2.8262 2.0547 35 1 5.6298 -1.5010 1.4179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = -13.211935 kcal Electronic energy + Delta-G solvation = -20229.192244 eV Core-core repulsion = 17059.995097 eV Total energy + Delta-G solvation = -3169.197147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56462 -38.36911 -36.32748 -35.24167 -32.60131 -32.19322 -31.65066 -28.53074 -28.08476 -27.66531 -24.81976 -23.05307 -22.32488 -20.19338 -19.53128 -17.38973 -17.02035 -16.52977 -15.83246 -15.05549 -14.87880 -14.73990 -14.08232 -13.85221 -13.60200 -13.19635 -12.58757 -12.54670 -12.45621 -12.31287 -11.87921 -11.74289 -11.65971 -11.36806 -11.16224 -10.72757 -10.70455 -10.66024 -10.48248 -10.02932 -9.55460 -9.38522 -9.06742 -8.70623 -8.66178 -8.28861 -8.09777 -6.28296 -4.37890 1.00139 1.13381 2.32359 3.17612 3.25344 3.27342 3.63977 4.06554 4.24685 4.27897 4.85149 4.97064 4.99601 5.10846 5.40431 5.45982 5.52379 5.56703 5.73006 5.77778 5.85079 5.97234 6.01486 6.12842 6.27884 6.43255 6.54209 6.75119 6.90145 7.12321 7.34339 7.44595 7.59386 7.72093 7.88521 8.09093 8.64895 9.31508 9.49226 10.78353 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028524 B = 0.005034 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.393463 B = 5560.847794 C = 6150.500404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.137 3.863 3 N -0.484 5.484 4 C 0.111 3.889 5 C -0.203 4.203 6 C 0.155 3.845 7 N -0.478 5.478 8 C 0.038 3.962 9 C -0.119 4.119 10 C 0.257 3.743 11 O -0.584 6.584 12 C -0.540 4.540 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.058 3.942 21 C -0.074 4.074 22 Cl -0.039 7.039 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.380 0.620 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 8.012 -2.823 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.001 4.001 3 N -0.194 5.194 4 C -0.046 4.046 5 C -0.225 4.225 6 C 0.051 3.949 7 N -0.199 5.199 8 C -0.088 4.088 9 C -0.158 4.158 10 C 0.216 3.784 11 O -0.393 6.393 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.067 4.067 21 C -0.104 4.104 22 Cl -0.010 7.010 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.177 0.823 27 H 0.162 0.838 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.709 8.375 -2.679 14.643 hybrid contribution 2.611 -0.288 0.111 2.629 sum -9.098 8.087 -2.567 12.440 Atomic orbital electron populations 1.20768 0.88211 1.03823 1.03488 1.21106 0.97341 0.86474 0.95219 1.67669 1.10168 1.27480 1.14099 1.22635 0.89107 0.98411 0.94434 1.22822 1.02635 0.93151 1.03868 1.19430 0.92028 0.90829 0.92618 1.63138 1.24010 1.27582 1.05186 1.23341 0.93075 0.99664 0.92726 1.22887 0.96501 0.96824 0.99572 1.19173 0.89569 0.80945 0.88674 1.86145 1.53615 1.18774 1.80716 1.21664 0.92394 1.12213 1.31613 0.92147 1.24985 0.99323 0.94654 0.94119 1.69700 1.30445 1.16479 1.36529 0.86479 0.82796 0.78955 0.79100 1.20383 1.21036 1.19840 1.23257 0.93304 0.99045 0.91095 1.21874 0.91919 0.88758 1.07889 1.98354 1.75162 1.30953 1.96558 0.90055 0.90228 0.90176 0.82319 0.83793 0.93948 0.91193 0.90580 0.92257 0.76975 0.92194 0.90447 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.78 36.01 0.35 -0.78 16 2 C 0.14 1.94 6.78 -82.61 -0.56 1.38 16 3 N -0.48 -6.94 10.27 -9.54 -0.10 -7.04 16 4 C 0.11 1.48 11.17 -17.60 -0.20 1.28 16 5 C -0.20 -3.03 8.14 -39.26 -0.32 -3.35 16 6 C 0.16 2.64 4.91 -83.56 -0.41 2.23 16 7 N -0.48 -9.20 4.89 -166.34 -0.81 -10.01 16 8 C 0.04 0.71 6.37 -2.09 -0.01 0.70 16 9 C -0.12 -2.65 5.54 -25.35 -0.14 -2.79 16 10 C 0.26 6.18 1.05 -90.39 -0.10 6.09 16 11 O -0.58 -15.14 12.94 -35.23 -0.46 -15.60 16 12 C -0.54 -13.91 8.08 -34.44 -0.28 -14.19 16 13 H 0.06 1.54 7.59 -52.49 -0.40 1.15 16 14 C 0.07 1.84 5.02 -17.82 -0.09 1.75 16 15 N -0.89 -23.09 10.81 55.43 0.60 -22.49 16 16 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.06 1.24 5.64 -2.18 -0.01 1.23 16 21 C -0.07 -1.18 6.35 -39.18 -0.25 -1.43 16 22 Cl -0.04 -0.60 26.88 -51.86 -1.39 -1.99 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.80 6.89 -51.93 -0.36 0.45 16 26 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.14 2.07 6.89 -52.49 -0.36 1.71 16 28 H 0.04 0.75 6.57 -51.93 -0.34 0.40 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.80 7.24 -51.93 -0.38 1.42 16 31 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 32 H 0.38 9.93 7.32 45.56 0.33 10.26 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.08 1.72 8.08 -51.93 -0.42 1.30 16 35 H 0.05 1.08 6.40 -51.93 -0.33 0.75 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -27.30 301.24 -8.15 -35.45 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.49 Total: 10.04 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.01 Total: -7.88 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.31 Total: -39.54 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.46 Total: -15.60 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.39 Total: -1.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.30 -8.15 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.239 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds