Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33391 * 125.20276 * 2 1 4 4 C 1.38424 * 114.91850 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53920 * 179.97438 * 4 3 2 6 6 S 1.81407 * 109.46960 * 90.02265 * 5 4 3 7 7 C 1.81397 * 102.99863 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47352 * 179.97438 * 7 6 5 9 9 C 1.50701 * 115.54267 * 65.33065 * 8 7 6 10 10 H 1.07994 * 120.00166 * 265.65163 * 9 8 7 11 11 C 1.37880 * 120.00067 * 85.65963 * 9 8 7 12 12 N 1.31517 * 119.99428 * 353.67902 * 11 9 8 13 13 Si 1.86800 * 120.00297 * 173.68324 * 11 9 8 14 14 H 1.48495 * 109.46948 * 89.99555 * 13 11 9 15 15 H 1.48500 * 109.46998 * 209.99686 * 13 11 9 16 16 H 1.48497 * 109.46768 * 329.99818 * 13 11 9 17 17 C 1.52995 * 117.50018 * 279.66403 * 8 7 6 18 18 C 1.52996 * 117.49944 * 211.00236 * 8 7 6 19 19 C 1.33390 * 114.92251 * 0.24650 * 4 3 2 20 20 C 1.50696 * 125.20129 * 179.75592 * 19 4 3 21 21 S 1.75883 * 125.20122 * 179.97438 * 2 1 3 22 22 H 1.09005 * 109.47234 * 89.99875 * 1 2 3 23 23 H 1.08994 * 109.47279 * 209.99905 * 1 2 3 24 24 H 1.09003 * 109.47007 * 330.00134 * 1 2 3 25 25 H 1.08004 * 122.54163 * 359.94089 * 3 2 1 26 26 H 1.09002 * 109.47338 * 330.02853 * 5 4 3 27 27 H 1.08995 * 109.47227 * 210.02173 * 5 4 3 28 28 H 1.09010 * 109.47268 * 60.00103 * 7 6 5 29 29 H 1.08997 * 109.47631 * 300.00168 * 7 6 5 30 30 H 0.97009 * 119.99382 * 175.02141 * 12 11 9 31 31 H 1.09005 * 117.50038 * 0.02562 * 17 8 7 32 32 H 1.09005 * 117.49733 * 145.01426 * 17 8 7 33 33 H 1.08999 * 117.49541 * 214.97507 * 18 8 7 34 34 H 1.08994 * 117.50477 * 359.97438 * 18 8 7 35 35 H 1.09000 * 109.47492 * 90.00511 * 20 19 4 36 36 H 1.08998 * 109.46968 * 209.99928 * 20 19 4 37 37 H 1.08996 * 109.47550 * 330.00069 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 16 5.0733 2.3924 1.7102 7 6 6.2991 3.7137 1.5052 8 6 6.7537 4.2057 2.8809 9 6 7.5056 3.2004 3.7146 10 1 6.9777 2.5943 4.4359 11 6 8.8675 3.0545 3.5567 12 7 9.4908 3.7004 2.5954 13 14 9.8272 1.9395 4.7078 14 1 9.8655 0.5648 4.1475 15 1 11.2128 2.4534 4.8535 16 1 9.1662 1.9139 6.0372 17 6 5.8433 5.1924 3.6146 18 6 7.1626 5.6746 3.0062 19 6 3.9750 -0.4478 -0.0042 20 6 5.3860 -0.9770 -0.0099 21 16 2.5208 -1.4372 0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.8669 2.0895 -0.0009 26 1 4.2565 2.8194 -0.5140 27 1 5.5620 1.6095 -0.5136 28 1 5.8527 4.5410 0.9532 29 1 7.1578 3.3305 0.9540 30 1 10.4575 3.6553 2.5284 31 1 4.9203 5.4909 3.1175 32 1 5.7885 5.1148 4.7005 33 1 7.9751 5.9141 3.6921 34 1 7.1082 6.2906 2.1086 35 1 5.7293 -1.1077 1.0163 36 1 5.4120 -1.9364 -0.5266 37 1 6.0372 -0.2700 -0.5236 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596333681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = 36.833717 kcal Electronic energy + Delta-G solvation = -17166.521814 eV Core-core repulsion = 14547.831731 eV Total energy + Delta-G solvation = -2618.690083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.46052 -36.53671 -33.36963 -31.91268 -29.85049 -28.40550 -27.46396 -25.27946 -24.22948 -21.59677 -21.09494 -19.23584 -18.17717 -16.99366 -16.19651 -15.26761 -14.87960 -14.60080 -14.17033 -13.88343 -13.66699 -13.44362 -13.26779 -13.12327 -12.82856 -12.57382 -12.28889 -11.90407 -11.63924 -11.56381 -11.32269 -11.12389 -10.95771 -10.87768 -10.64998 -10.44448 -10.17761 -9.61861 -9.34090 -8.79382 -8.42635 -8.34202 -8.11693 -7.95519 -6.74521 -6.02681 -4.07327 1.02580 1.65681 2.01962 2.20999 3.16192 3.31718 3.38509 3.43217 3.58578 4.43947 4.76137 4.96420 5.17641 5.24128 5.26644 5.37386 5.39694 5.41405 5.51911 5.66835 5.74680 5.78999 5.90982 5.99810 6.16045 6.23109 6.24089 6.42302 6.50234 6.55717 6.64887 6.75762 6.83436 7.08188 7.42565 7.50749 7.90778 8.42483 8.94432 9.58534 11.06501 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.004503 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.262986 B = 6216.831405 C = 6977.570700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.189 4.189 3 C -0.116 4.116 4 C -0.082 4.082 5 C -0.043 4.043 6 S -0.232 6.232 7 C -0.030 4.030 8 C 0.056 3.944 9 C -0.482 4.482 10 H 0.062 0.938 11 C 0.072 3.928 12 N -0.882 5.882 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.205 4.205 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.083 4.083 21 S 0.081 5.919 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -6.576 -7.831 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.306 4.306 3 C -0.147 4.147 4 C -0.095 4.095 5 C -0.193 4.193 6 S -0.002 6.002 7 C -0.178 4.178 8 C 0.054 3.946 9 C -0.520 4.520 10 H 0.080 0.920 11 C -0.131 4.131 12 N -0.519 5.519 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.242 4.242 18 C -0.189 4.189 19 C -0.277 4.277 20 C -0.142 4.142 21 S 0.345 5.655 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.555 -8.594 -7.026 17.520 hybrid contribution 1.472 1.599 -0.575 2.248 sum -12.083 -6.995 -7.601 15.896 Atomic orbital electron populations 1.20281 0.88000 1.03009 1.02365 1.24251 0.99615 0.95477 1.11207 1.19892 0.92149 0.99314 1.03345 1.18161 0.93789 0.93030 1.04472 1.21974 0.99307 0.98215 0.99788 1.87108 1.54873 1.51248 1.06951 1.23114 0.97341 0.95273 1.02117 1.18439 0.96402 0.89281 0.90445 1.20379 0.91919 1.19646 1.20019 0.92032 1.24930 0.97734 0.95638 0.94753 1.70018 1.08590 1.43106 1.30231 0.86677 0.79173 0.81078 0.81606 1.20561 1.21306 1.19845 1.23013 0.93217 1.08800 0.99200 1.22573 0.96540 0.98988 1.00781 1.24219 0.99003 0.95601 1.08923 1.20373 0.89592 1.00599 1.03621 1.84017 0.96735 1.09834 1.74933 0.91083 0.91546 0.90602 0.84402 0.90380 0.89865 0.93579 0.89914 0.93134 0.91462 0.90327 0.89828 0.91932 0.89796 0.91794 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.38 36.00 0.37 -0.32 16 2 C -0.19 -2.32 6.51 -36.00 -0.23 -2.55 16 3 C -0.12 -1.60 9.85 -41.21 -0.41 -2.00 16 4 C -0.08 -1.24 5.06 -106.25 -0.54 -1.78 16 5 C -0.04 -0.69 5.93 36.01 0.21 -0.48 16 6 S -0.23 -4.70 21.41 -107.50 -2.30 -7.00 16 7 C -0.03 -0.67 5.80 37.16 0.22 -0.45 16 8 C 0.06 1.37 1.34 -155.66 -0.21 1.16 16 9 C -0.48 -13.08 8.49 -34.44 -0.29 -13.37 16 10 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 11 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 12 N -0.88 -24.58 12.90 55.43 0.71 -23.86 16 13 Si 0.89 21.19 29.55 -169.99 -5.02 16.16 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.20 -4.52 9.96 -26.70 -0.27 -4.79 16 18 C -0.15 -3.46 9.40 -26.70 -0.25 -3.71 16 19 C -0.16 -2.26 6.50 -36.00 -0.23 -2.49 16 20 C -0.08 -1.10 10.05 36.00 0.36 -0.74 16 21 S 0.08 1.00 23.31 -107.50 -2.51 -1.50 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 26 H 0.08 1.16 8.13 -51.92 -0.42 0.73 16 27 H 0.08 1.31 6.59 -51.93 -0.34 0.97 16 28 H 0.05 0.94 8.09 -51.92 -0.42 0.52 16 29 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.04 6.64 -51.93 -0.34 0.70 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -28.44 338.21 -11.11 -39.55 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.73 Total: 1.23 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -1.36 Total: -29.67 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.71 Total: -23.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -4.81 Total: -8.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.44 -11.11 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596333681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.380 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds